| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 81,381 – 81,473 |
| Length | 92 |
| Max. P | 0.931356 |
| Location | 81,381 – 81,473 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 69.47 |
| Mean single sequence MFE | -22.95 |
| Consensus MFE | -13.25 |
| Energy contribution | -14.88 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.931356 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 81381 92 - 1281640 ---------AUUAAUUUAAAAAGAGGUGUUAUUGCAGGACUUUG-AUAAAGCUGAAGUCCGCCCUAAUUUACAGACGCAUAUGCAUGUGU--------GUUUAGUCUCUU ---------...........((((((.((((..((.(((((((.-........)))))))))..))))....(((((((((....)))))--------))))..)))))) ( -22.30) >DroSec_CAF1 24586 102 - 1 AAGCUUUUACUUUAUUAAAAAAGAGGUGGUACUGCAGGACUUUGAAUAAAGCCAAAGUCCGCCCUAAUUCACAGACGCAUAUGUAUGCAU--------GCAUAGCCUCUU ....................(((((((.(((.((((((((((((........))))))))..........(((........))).)))))--------))...))))))) ( -28.30) >DroEre_CAF1 39330 108 - 1 GAGCUUUCACUUAAUUUAA--AAAGGUGGUAGUGCAGGACUUCUAAUAAAGCUGAAGUCCGCCCUAAUUCACACGCGCAUAUAUAUGCAUAUACAUACUAAUAGUCUCUU (((((..............--....(((((((.((.(((((((..........))))))))).)))..))))....((((....))))..............)).))).. ( -23.50) >DroYak_CAF1 44739 89 - 1 ----------UUAAUUUAA-AAAAGGUGGAGGUACAGGACUUUGAAUAAAGCUGAGGUCCGCCCUAAUACACAUACGCA----------UAUGCCUAUGUAUAGUCUCUU ----------.........-.......(((((....((((((((........))))))))..........(((((.((.----------...)).)))))....))))). ( -17.70) >consensus _________CUUAAUUUAA_AAAAGGUGGUAGUGCAGGACUUUGAAUAAAGCUGAAGUCCGCCCUAAUUCACAGACGCAUAUGUAUGCAU________GUAUAGUCUCUU ....................((((((((.(((.((.((((((((........)))))))))).)))...)))....((((....)))).................))))) (-13.25 = -14.88 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:47 2006