| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 1,264,762 – 1,264,856 |
| Length | 94 |
| Max. P | 0.728718 |
| Location | 1,264,762 – 1,264,856 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 80.29 |
| Mean single sequence MFE | -22.83 |
| Consensus MFE | -14.25 |
| Energy contribution | -14.37 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1264762 94 - 1281640 GUAUCCGAAAAAAUUUUACGAUUUUCAUUUGAAAUCGAUAAAUCGGUGCUCCGGUUUUCGAUUUAUGAAACGUGCACUUUUGUCUGGCGAAAAU ....((((.((((.(.((((..((((((...(((((((.(((((((....)))))))))))))))))))))))).).)))).)).))....... ( -21.40) >DroSec_CAF1 9911 86 - 1 -UACCGGG---CAUGCUCCGGU----AAUCGAAAUCGAAAAAUCGAUGCUCCAGUUUUCGAUUUGUGAAACAUUCACUUUUGUCUAGCCGAAAU -(((((((---....).)))))----).(((((((((((((...(.....)...))))))))))((((.....))))...........)))... ( -22.20) >DroSim_CAF1 6914 86 - 1 -UACCGGG---CAUGCUCCGGU----AAUCGAAAUCGAAAAAUCGAUGCUCCGGUUUUCGAUUUGUGAAACAUUCACUUUUGUCUAGCCGAAAU -(((((((---....).)))))----).(((((((((((((.(((......)))))))))))))((((.....))))...........)))... ( -24.90) >consensus _UACCGGG___CAUGCUCCGGU____AAUCGAAAUCGAAAAAUCGAUGCUCCGGUUUUCGAUUUGUGAAACAUUCACUUUUGUCUAGCCGAAAU ..((((((........))))))......((((((((((.((((((......))))))))))))).))).......................... (-14.25 = -14.37 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:56 2006