Locus 193

Sequence ID 4_DroMel_CAF1
Location 1,213,946 – 1,214,057
Length 111
Max. P 0.793091
window312

overview

Window 2

Location 1,213,946 – 1,214,057
Length 111
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 80.41
Mean single sequence MFE -30.27
Consensus MFE -17.80
Energy contribution -16.53
Covariance contribution -1.27
Combinations/Pair 1.58
Mean z-score -2.16
Structure conservation index 0.59
SVM decision value 0.59
SVM RNA-class probability 0.793091
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1213946 111 - 1281640
ACUGUGUUCGUGCAGAGGAGGAAGCUUUGCAGGGAGAUAAUAUACUAACUGUUGGUCGCAGUGAGAACAGCGAAAGCGAGGAAUGCGAUAGCGGGGAACGGUAAAUAAAA-----A
(((((.(((.(((((((.......))))))).))).............((((((.(((((((....)).((....))......)))))))))))...)))))........-----. ( -33.50)
>DroGri_CAF1 17455 116 - 1
AUUGUGUCCGGGCCGAGGAGGAGGCCCUGCAGGGCGAUACCGCACCAGCAACGGGACGCAGCGAGAAUAGCGAGAGUGAAGAAUGCGAUAGUGGUGAACGGUAAAUAAUAUAUCAU
..((((((((((((........)))))(((.(((((....))).)).)))...)))))))(((......((....))......)))((((...((.........))....)))).. ( -38.30)
>DroEre_CAF1 7457 111 - 1
ACUGCGUGCGUGCAGAGGAGGAAGCUUUACAGGGAGAUAAUAUACUAACUGUUGGUCGCAGUGAAAAUAGCGAAAGCGAGGAAUGCGAUAGCGGUGAACGGUAAAUAAAA-----C
.(((((....))))).((((....))))..............((((.(((((((.(((((((....)).((....))......))))))))))))....)))).......-----. ( -27.50)
>DroWil_CAF1 63372 111 - 1
ACUGUGUGCGGGCAGAAGAGGAAGCAUUACAAGGCGAUAGUGCACAGGCUACAGGACGCAGCGAGAAUAGCGAAAGUGAGGAGUGUGAUAGUGGCGAACGGUAAGAAAAU-----A
.(((((..(..((.....((......)).....))....)..)))))(((((....((((.(.......((....)).....)))))...)))))...............-----. ( -23.80)
>DroYak_CAF1 11569 111 - 1
ACUGCGUGCGUGCAGAGGAGGAAGCUUUACAGGGAGAUAAUAUACUAACUGCUGGUCGCAGUGAGAACAGCGAAAGCGAGGAAUGCGAUAGCGGUGAACGGUAAAUAAAA-----A
.(((((....))))).((((....))))..............((((.(((((((.(((((((....)).((....))......))))))))))))....)))).......-----. ( -30.60)
>DroPer_CAF1 38783 111 - 1
ACUGUGUGCGAGCGGAAGAGGAAGCUUUGCAGGGAGAUAAUAUCCAAGCUGCUGGACGCAGUGAAAAUAGCGAGAGCGAGGAGUGCGAUAGUGGUGAACGGUAAUUAGAA-----U
(((((.(((((((..........)).))))).(((.......)))..((..(((..((((((....)).((....))......)))).)))..))..)))))........-----. ( -27.90)
>consensus
ACUGUGUGCGUGCAGAGGAGGAAGCUUUACAGGGAGAUAAUAUACUAACUGCUGGACGCAGUGAGAAUAGCGAAAGCGAGGAAUGCGAUAGCGGUGAACGGUAAAUAAAA_____A
.((((......)))).((((....))))............(((....(((((((..((((.........((....))......)))).))))))).....)))............. (-17.80 = -16.53 +  -1.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:55 2006