Locus 191

Sequence ID 4_DroMel_CAF1
Location 1,152,335 – 1,152,455
Length 120
Max. P 0.758084
window309

overview

Window 9

Location 1,152,335 – 1,152,455
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.78
Mean single sequence MFE -27.27
Consensus MFE -16.67
Energy contribution -17.12
Covariance contribution 0.45
Combinations/Pair 1.41
Mean z-score -2.34
Structure conservation index 0.61
SVM decision value 0.49
SVM RNA-class probability 0.758084
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1152335 120 - 1281640
AUCGAGCCACAAUCCAAAUGGAUACUGAUACAAAAAUGUAUCCAAAAGCAAUAUAAAACCAAAUUUCAACAGCGAAUGGAGCAAUGAAGGAGAAAAAUUUCGUUUGAGCUCGGUCUGAUA
(((((((((...((((..(((((((............)))))))....................(((......)))))))..(((((((........))))))))).)))))))...... ( -25.20)
>DroVir_CAF1 13947 120 - 1
AUCGUGCUACUAUCCAGAUACAGAAUGAUACAAGAAUGUAGCCGAAUGCUAUGUAAAACCAUAUUUCGAUGGCGAGUGGGUUCAUAAAAGAGAAAAACUUCGUUUGAGCUCGAUCUGAUA
.(((.(((((...........................))))))))..(((((..(((......)))..)))))((.((((((((.....(((......)))...)))))))).))..... ( -22.63)
>DroWil_CAF1 4069 120 - 1
AACGAGCCACUAUCCAAAUGCAAAUGGAUACAAGAAUGUAUCCAAAUGCUAUAUAUACCCAUAUUUCAAUGGCAAGUGGAUUCAUAAACGAGAAAAAUUUCGUUUGAGCUCGAUCUGAUA
..(((((....(((((...(((..((((((((....))))))))..))).........((((......))))....)))))...(((((((((....))))))))).)))))........ ( -35.30)
>DroMoj_CAF1 3808 120 - 1
GUCGUGCUACUAUCCAGAUACACAUGGAUACUAGAAUGUACCCAAAUGCUAUAUAAAACCAGAUUUCGAUAGCGAGCGGAUUCAUAAAUGAGAAAAACUUGGUUUGUGCACGAUCUGAAA
(((((((....((((.........(((.(((......))).)))..((((((..(((......)))..))))))...))))..((((((.((......)).)))))))))))))...... ( -25.50)
>DroAna_CAF1 355993 120 - 1
GCCGAGCGACUAUCCAAAUUGAUAUUGAAACGAAAAUAUAUCCAAUGGCUAUAUAAACCCAUAUUUCUAUAGCUAGUGGAUUCAUAAACGAGAAGAAUUUCGUUUGAGCUCGAUCUGAAA
..(((((((............(((((........)))))(((((.((((((((.(((......))).)))))))).))))))).(((((((((....))))))))).)))))........ ( -30.90)
>DroPer_CAF1 3844 120 - 1
AUCGUGCGACUAUCCAAAUAGAGAUUGAUACAAAAAUAUACCCAAAUGCUAUAUAGAACCAUAUUUCAAUAGCAAGUGGAUUCAUAAACGAAAAAAACUUCGUUUGAGCUCGAUCUGAAA
.((......((((....))))(((((((.............(((..((((((...(((......))).))))))..))).....((((((((......))))))))...))))))))).. ( -24.10)
>consensus
AUCGAGCCACUAUCCAAAUACAGAUUGAUACAAAAAUGUAUCCAAAUGCUAUAUAAAACCAUAUUUCAAUAGCGAGUGGAUUCAUAAACGAGAAAAACUUCGUUUGAGCUCGAUCUGAAA
(((((((..................................(((..((((((..(((......)))..))))))..))).....((((((((......)))))))).)))))))...... (-16.67 = -17.12 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:51 2006