| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 1,151,557 – 1,151,673 |
| Length | 116 |
| Max. P | 0.520146 |
| Location | 1,151,557 – 1,151,673 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.54 |
| Mean single sequence MFE | -17.88 |
| Consensus MFE | -10.61 |
| Energy contribution | -11.50 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.59 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520146 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1151557 116 - 1281640 UAAUUGAAAUUUAA-AG-UUU--AUACUUGCCCUUUCCAUUAAUUCCUGCACGAUUCCAUUCCAUGAAUUAGUCUCUGGUAUGUAAACACCGUACAUAUUAUCGGGAACUAAUUCAAUUU ((((.((((....(-((-(..--..))))....)))).))))......................(((((((((..((((((((((.......)))))))...)))..))))))))).... ( -22.80) >DroVir_CAF1 10226 106 - 1 CA-----AAUGUA-------U--AUACUCGCCCUUUCCAUUAACUCUUGCACAAUUCCAUUCCAAGAAUUCGUUUCCGGUAUGUAAACACCAUACAUAUUAUCAGGAACCAAUUCAAUUU ..-----......-------.--..........................................(((((.(((((.((((((((.......))))))))....))))).)))))..... ( -12.30) >DroWil_CAF1 3299 111 - 1 ------UAACUUAA-CGAUCA--AAACUUACUCUUUCCAUCAGUUCCUGAACAAUACCGUUCCAAGAAUUGGUUUCUGGUAUGUAAACCCCAUACAUAUUAUCCGGCACAAGUUCAAUUU ------.(((((..-((....--...............((((((((..((((......))))...))))))))...(((((((((.......)))))))))..))....)))))...... ( -17.50) >DroMoj_CAF1 2741 110 - 1 CA-----AAUAUAG-AG--AU--CUUCUUGCCCUUUCCAUUAACUCCUGAACGAUGCCAUUCCAAGAGUUCGUUUCUGGUAUGUACACCCCAUACAUAUUAUCGGGCACGAGUUCGAUUU ..-----.......-((--((--((((.(((((...............((((((.(((.......).)))))))).(((((((((.......)))))))))..))))).)))...))))) ( -21.20) >DroAna_CAF1 355257 116 - 1 --CUUAUGUUUUAU-AG-CUUGCUUACUUACCCUUUCCAUUAAUUCUUGAACAAUGCCAUUCCAUGAAUUAGUUUCUGGUAUAAAUACACCAUACAUAUUGUCGGGAACUAAAUCGAUAG --..(((((.....-..-....................((((((((..(((........)))...))))))))...((((........)))).))))).((((((........)))))). ( -13.90) >DroPer_CAF1 3030 117 - 1 CAAAUUUUAGUCAAUUC-GUA--AUACUUGCCCUUUCCAUUAACUCCUGAACAAUUCCAUUCCAAGAAUUGGUCUCCGGUAUAUACACCCCAUACAUAUUAUCGGGGACUAACUCGAUUU ........((((.....-(((--.....)))..................................((.(((((((((((((..................))))))))))))).)))))). ( -19.57) >consensus CA____UAAUUUAA_AG__UU__AUACUUGCCCUUUCCAUUAACUCCUGAACAAUUCCAUUCCAAGAAUUAGUUUCUGGUAUGUAAACACCAUACAUAUUAUCGGGAACUAAUUCAAUUU .................................................................((((((((.(((((((((((.......)))))))...)))).))))))))..... (-10.61 = -11.50 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:48 2006