Locus 19

Sequence ID 4_DroMel_CAF1
Location 189,356 – 189,476
Length 120
Max. P 0.706342
window32

overview

Window 2

Location 189,356 – 189,476
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.67
Mean single sequence MFE -21.13
Consensus MFE -18.35
Energy contribution -19.39
Covariance contribution 1.04
Combinations/Pair 1.11
Mean z-score -1.31
Structure conservation index 0.87
SVM decision value 0.36
SVM RNA-class probability 0.706342
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 189356 120 - 1281640
UCCGAGAUCUAGACCACAAAACACACUUUUUCCGCCCAGAGGCCUUUUUCAAACUCAGAUUAAAAAUGAAAACCUAAAGGUACCUAGGACAAACGAUAGUGUUCCUAACAAUGAUUUUGA
..(((((((..........(((((..........((.((..((((((.......(((.........)))......))))))..)).))..........))))).........))))))). ( -19.48)
>DroSec_CAF1 16784 120 - 1
UCCAAGAUCAAGACCACAAAACACACUUUUUCCGCCCAGAGGCCUUUUUCAAAGUCAGCAUAAAAAUGAAAACCUAAAGGCAGCUAGGACAAACGAUAGUAUUUCUAACAAUGAUUUUGA
..((((((((.......................(((.((..((((((.......(((.........)))......))))))..)).)).)....(.(((.....))).)..)))))))). ( -21.62)
>DroSim_CAF1 13545 120 - 1
UCCAAGAUCAAGACCACAAAACACACUUUUUCCGCCCAGAGGCCUUUUUCAAAGUCAGCAUAAAAAUGAAAACCUAAAGGCAGCUAGGACAAACGAUAGUAUUUCUAACAAUGAUUUUGA
..((((((((.......................(((.((..((((((.......(((.........)))......))))))..)).)).)....(.(((.....))).)..)))))))). ( -21.62)
>DroEre_CAF1 18713 120 - 1
UCCAAGAUCAAGACCACAAAACACACUUUUUCCGCCAAGAGGCCUUUUUCAAAGUCAGCUAAAAAAUGAAAACCUUAAGGCAGUUAAGACAAACGAUAGUGUUUCUAGCAAUGAUUUUGA
..((((((((........((((((.........(((..((((...((((((...............))))))))))..))).(((......)))....)))))).......)))))))). ( -23.02)
>DroYak_CAF1 15914 120 - 1
UCCAAGAUCAAGACCACAAAACACACUUUUUCCGCCAAGAAGCCUUUUUCAAAGUCAGCUAAACAAUGAAAACCUUAAGGCAGUUAGGACAAACGAUAGUGUAUUUAACAAUGAUUUUGA
..((((((((.......................(((...(((...((((((..((.......))..)))))).)))..))).(((((((((........))).))))))..)))))))). ( -19.90)
>consensus
UCCAAGAUCAAGACCACAAAACACACUUUUUCCGCCCAGAGGCCUUUUUCAAAGUCAGCUUAAAAAUGAAAACCUAAAGGCAGCUAGGACAAACGAUAGUGUUUCUAACAAUGAUUUUGA
..((((((((........((((((..........((.((..((((((.......(((.........)))......))))))..)).))..........)))))).......)))))))). (-18.35 = -19.39 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:32 2006