| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 1,140,473 – 1,140,593 |
| Length | 120 |
| Max. P | 0.778311 |
| Location | 1,140,473 – 1,140,593 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.28 |
| Mean single sequence MFE | -33.45 |
| Consensus MFE | -17.81 |
| Energy contribution | -17.32 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.54 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1140473 120 + 1281640 AGAAUGUGGUUAUGAGAAGCUUUGUGAGAAAGUGGUUCAGUGUUUUUAAUUGAACCUUCGUUAUCUAUUGAAAAUGGUUCAUCAUUGUUAAGAAUCUCAUAUUUGCAAACAUCACCAAAG ....((..(.(((((((..(((.(((((((...((((((((.......)))))))).(((((.((....)).)))))))).))))....)))..))))))).)..))............. ( -30.90) >DroVir_CAF1 3276 120 + 1 AGUAUAUGAUUAUGGGAAACCUUAUGCAACAAGGGUUCAGUGUUCUUUACGGAGCCCUCGUUGUCGAUAGUAAAUGGUUCAUCGCUAUUUAAUAUCUCGUAUUUGCAAACGUCGCCAAAA .((((((((....((....))....(((((.(((((((.(((.....))).))))))).))))).((((.((((((((.....)))))))).))))))))))..)).............. ( -35.50) >DroGri_CAF1 5130 120 + 1 AGGAUGUGAUUGUGGGAGAUCUUGUGAGACAAGGGCUCCGUAUUCUUGAUGGAGCCUUCGUUGUCGAUUGUAAACGGCUCAUCGCUAUUCAAUAUAUCGUAUUUGCAUACAUCCCCAAAG .(((((((..((..((.(((....(((((((((((((((((.......)))))))))...)))))..........(((.....)))..)))....)))...))..)))))))))...... ( -36.00) >DroWil_CAF1 3360 120 + 1 AGAAUGUGAUUAUGGGAUGCCUUGUGCGAAAGUGGUUCGGUGUUCUUGAUCGACCCCUCGUUGUCAAUGGCAAAGGGCUCAUCAUUGUUGAGUAUCUCAUAUUUGCAGACGUCCCCAAAC .(..((..(.(((((((((((....((((..(((((((..(((..((((.((((.....))))))))..)))..)))).)))..)))).).)))))))))).)..))..).......... ( -36.30) >DroMoj_CAF1 4570 120 + 1 AAAAUGUGAUUGUGGGAUACCUUAUGAGAGAGAGGCUCUUUGUUUUUGAUUGAGCCUUCGUUGUCGAUUGUGAAUGGUUCAUCACUAUUUAGUAUCUCAUAUUUGCAAACAUCUCCAAAC ....((..(.((((((((((....(((.((.(((((((.............)))))))..)).)))....((((((((.....)))))))))))))))))).)..))............. ( -33.62) >DroAna_CAF1 45115 120 + 1 AAAAUGUGGUUAUGUGAUGCUUUAUGCGAAAGUGGUUCAGUGUUUCUGAUUGAGCCCUCGUUAUCGAUUGAAAACGGUUCAUCAUUGUUAAGAAUCUCAUAUUUGCAAACAUCACCAAAA ......((((.((((..(((..((((.((.((.((((((((.......))))))))))((((.((....)).))))..................)).))))...))).)))).))))... ( -28.40) >consensus AGAAUGUGAUUAUGGGAUACCUUAUGAGAAAGUGGUUCAGUGUUCUUGAUUGAGCCCUCGUUGUCGAUUGUAAAUGGUUCAUCACUAUUAAGUAUCUCAUAUUUGCAAACAUCACCAAAA ....(((((.(((((((................((((((((.......))))))))................((((((.....)))))).....))))))).)))))............. (-17.81 = -17.32 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:47 2006