Locus 188

Sequence ID 4_DroMel_CAF1
Location 1,118,732 – 1,118,851
Length 119
Max. P 0.650025
window306

overview

Window 6

Location 1,118,732 – 1,118,851
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.46
Mean single sequence MFE -25.65
Consensus MFE -23.79
Energy contribution -23.10
Covariance contribution -0.69
Combinations/Pair 1.19
Mean z-score -1.43
Structure conservation index 0.93
SVM decision value 0.24
SVM RNA-class probability 0.650025
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1118732 119 - 1281640
UCGUUUGUCUACUUCUUUGCAUAAGUAAAGUGGACCGAGCACUCUCGUUGCUGUGGCUUAUUUUGUAGGUAUGGUCUUCUUUAGUCAAGCCAUUGACAUUAUU-UUUCUUUUAUUUAAAA
..((((((((((((..((.....))..))))))).)))))......(((...(((((((...(((.(((........))).)))..))))))).)))......-................ ( -23.40)
>DroSec_CAF1 30670 119 - 1
UCGUUUGUCUACGUCUUUGCAUAAGUAAAGUGGACCAAGCACUCUCGUUGCUGUGGCUUAUUAUGUAGGUAUGGUCUUCUUUAGUCAAGCCAUUGACAUUAUU-UUUCUUUUAUUUAAAA
..((((((((((...(((((....)))))))))).)))))......(((...(((((((((((...(((........))).)))).))))))).)))......-................ ( -24.20)
>DroEre_CAF1 31304 120 - 1
UCGUUUGUCUACUUCUUUGCAUAAGUAAAGUGGACCGAGCACUCUCGUUGCUGUGGCUUAUUCAGUAGAUAUGGUCUUCUUUUGGCCAGCCAUUGACAUUAUUUUUUCUUUUAUUUAAAA
..((((((((((((..((.....))..))))))).)))))......(((...(((((....((....))..(((((.......)))))))))).)))....................... ( -25.90)
>DroYak_CAF1 23216 120 - 1
UCGUUUGUCUACUUCUUUGCAUAAGUAAAGUGGACGGAACACUCUCGUUGCUGUGGCUUAUUCAAAAGAUAUGGUCUUCUUUUGGCCAGCCAUUGACAUUAUUUUUUCUUUUAUUUAAAA
..((((((((((((..((.....))..)))))))).))))......(((...((((((...((((((((........))))))))..)))))).)))....................... ( -29.10)
>consensus
UCGUUUGUCUACUUCUUUGCAUAAGUAAAGUGGACCGAGCACUCUCGUUGCUGUGGCUUAUUCAGUAGAUAUGGUCUUCUUUAGGCAAGCCAUUGACAUUAUU_UUUCUUUUAUUUAAAA
..((((((((((...(((((....))))))))))).))))......(((...(((((((...(((.(((........))).)))..))))))).)))....................... (-23.79 = -23.10 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:45 2006