| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 1,116,379 – 1,116,573 |
| Length | 194 |
| Max. P | 0.842382 |
| Location | 1,116,379 – 1,116,496 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.61 |
| Mean single sequence MFE | -22.02 |
| Consensus MFE | -17.01 |
| Energy contribution | -16.20 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1116379 117 + 1281640 AGUUAAUGAUCGUACAACCUCAAGAUCUUAUUCACAUUGAAAUUGAAGCACUAUUGGUGUACGAUUACAACGCUC-ACAUUAUCAGGAUAUA--AAAAAAAGGUGAUAGUAAUUCAGCAC .(((..((((((((((.((...((..(((.(((.....)))....)))..))...)))))))))))).)))(((.-..(((((((.......--.........))))))).....))).. ( -20.89) >DroSec_CAF1 27791 117 + 1 AGUUGAUGAUCGUACAACCUCAAGAUCUUAUUUACAUUCAAAUUGAAGCACAAUUGGUGUACGAUUACAACGCUC-ACAUUAUAAGGAUAUA--AAAAAAAUGUGAUAGUAAUCCAGCAC .((((.((((((((((.((....((............)).(((((.....)))))))))))))))))))))..((-(((((...........--.....))))))).............. ( -23.99) >DroSim_CAF1 15457 117 + 1 AGUUGAUGAUCGUACAACCUCAAGAUCUUAUUUACAUUCAAAUUGAAGCACAAUUGGUGUACGAUUACAACGCUC-ACAUUAUAAGGAUAUA--AAAAAAAUGUGAUAGUAAUCCAGCAC .((((.((((((((((.((....((............)).(((((.....)))))))))))))))))))))..((-(((((...........--.....))))))).............. ( -23.99) >DroEre_CAF1 28709 119 + 1 AAUUGAUGAUUGUGCGACAUCAAGAUCUGAUUCGUAUUCAAAUUGAAGUACAAUUGGUGUACGAUUACAACGCUCCUUAUAAUCACGAUAUAUAAAA-AAAUGUUAUAGUAACUCAGCAC .((((.((((((((((..((((.....))))((((((...(((((.....)))))...))))))......))).....)))))))))))........-...................... ( -19.20) >consensus AGUUGAUGAUCGUACAACCUCAAGAUCUUAUUCACAUUCAAAUUGAAGCACAAUUGGUGUACGAUUACAACGCUC_ACAUUAUAAGGAUAUA__AAAAAAAUGUGAUAGUAAUCCAGCAC .((((.((((((((((...((((.......((((.........))))......))))))))))))))))))(((..((((((((.................)))))).)).....))).. (-17.01 = -16.20 + -0.81)
| Location | 1,116,458 – 1,116,573 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.99 |
| Mean single sequence MFE | -29.98 |
| Consensus MFE | -20.17 |
| Energy contribution | -21.05 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1116458 115 - 1281640 GUGGUUUCUGGCUUCACCCGACUUACGUUGUACUCACGGAGUAAUCUGUGUUCCCAUAUAUUUGUGGUUAC--AAAGUC-GUGCUGAAUUACUAUCACCUUUUUUU--UAUAUCCUGAUA (((((...(((.((((.(((((((....((((..((((((....))))))...(((((....))))).)))--))))))-).).)))))))..)))))........--............ ( -26.60) >DroSec_CAF1 27870 116 - 1 GUGGUUUCUGGCUUCAGCCGACUUAAGUUGUACUCACGGAGUAAUCUUUGUUCCCAUAUAUUUGUGGUUAC--AAAGUCGGUGCUGGAUUACUAUCACAUUUUUUU--UAUAUCCUUAUA (((((.((..((....(((((((((((...(((((...)))))..)))(((..(((((....)))))..))--)))))))))))..)).....)))))........--............ ( -34.50) >DroSim_CAF1 15536 116 - 1 GUGGUUUCUGGCUUCAGCCGACUUAAAUUGUACUCACGGAGUAAUCUUUGUUCCCAUAUAUUUGUGGUAAC--AAAGUCGGUGCUGGAUUACUAUCACAUUUUUUU--UAUAUCCUUAUA (((((.((..((....((((((((......(((((...))))).....((((.(((((....))))).)))--)))))))))))..)).....)))))........--............ ( -33.20) >DroEre_CAF1 28789 119 - 1 GUGGUUUCUGCCUUCACUCGAUUUAAGUUGUACUAAUGGAGUAAUCUGUGUUCCCAUACAUUUGUGGUUACACCGAUUCGGUGCUGAGUUACUAUAACAUUU-UUUUAUAUAUCGUGAUU ..(((....))).((((.........((((((.((((..(((((((.((((..(((((....)))))..)))).)))....))))..)))).))))))((..-....)).....)))).. ( -25.60) >consensus GUGGUUUCUGGCUUCACCCGACUUAAGUUGUACUCACGGAGUAAUCUGUGUUCCCAUAUAUUUGUGGUUAC__AAAGUCGGUGCUGAAUUACUAUCACAUUUUUUU__UAUAUCCUGAUA (((((.......((((((((((((...........(((((....)))))((..(((((....)))))..))...)))))))..))))).....)))))...................... (-20.17 = -21.05 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:41 2006