Locus 185

Sequence ID	4_DroMel_CAF1
Location	1,113,452 – 1,113,601
Length	149
Max. P	0.976391

overview

Window 0

Location	1,113,452 – 1,113,571
Length	119
Sequences	3
Columns	120
Reading direction	forward
Mean pairwise identity	94.43
Mean single sequence MFE	-24.83
Consensus MFE	-23.82
Energy contribution	-23.60
Covariance contribution	-0.22
Combinations/Pair	1.04
Mean z-score	-1.40
Structure conservation index	0.96
SVM decision value	-0.07
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1113452 119 + 1281640
AUGGUAAUUCCAGUUGCAACCUUCCAAAACUAAAGAACAAUAGCAAUUGCAGA-AAGAAGAGAAGGGAACAUUUUAAACAAGUUCACAAGUGCAAUGCACUUGGGCCGCGAUUGAAAACC
..(((..((.(((((((..((((((....(....).......((....))...-.....).)))))((((...........)))).(((((((...)))))))....))))))).))))) ( -26.20)
>DroSec_CAF1 26398 119 + 1
AUGGUAAUUCCAGUUGCAACCGUCCAAAACUUAAGAACAAUAGCGAUUGCAAA-AAGAAGAGAAGGGGACAUUUAAAACAAGUUCACAAGUGCAAUGUACUUGGACCGCGAUUGAAAACC
..(((..((.(((((((....((((....(((..........((....))...-........))).))))...........(.((.(((((((...))))))))).)))))))).))))) ( -24.20)
>DroSim_CAF1 14032 120 + 1
AUGGUAAUUCCAGUUGCAAGCGUCCAAAACUUAAGAACAAUAGCGAUUGCAAAAAAGAAGAGAAGGGGACAUUUAAAACAAGUUCACAAGUGCAAUGUACUUGGACCGCGAUUGAAAACC
..(((..((.(((((((..(.((((.........((((....((....))..............(....)...........))))..((((((...)))))))))))))))))).))))) ( -24.10)
>consensus
AUGGUAAUUCCAGUUGCAACCGUCCAAAACUUAAGAACAAUAGCGAUUGCAAA_AAGAAGAGAAGGGGACAUUUAAAACAAGUUCACAAGUGCAAUGUACUUGGACCGCGAUUGAAAACC
..(((..((.(((((((.................((((....((....))..............(....)...........)))).(((((((...)))))))....))))))).))))) (-23.82 = -23.60 +  -0.22)

alignment

secondary structure

dotplot

Window 1

Location	1,113,492 – 1,113,601
Length	109
Sequences	3
Columns	110
Reading direction	reverse
Mean pairwise identity	95.14
Mean single sequence MFE	-31.30
Consensus MFE	-28.65
Energy contribution	-29.10
Covariance contribution	0.45
Combinations/Pair	1.03
Mean z-score	-3.21
Structure conservation index	0.92
SVM decision value	1.77
SVM RNA-class probability	0.976391
Prediction	RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1113492 109 - 1281640
ACUAGCAAAAUCUUGGAAGGGGAUAUAAAAGGUUUUCAAUCGCGGCCCAAGUGCAUUGCACUUGUGAACUUGUUUAAAAUGUUCCCUUCUCUUCUU-UCUGCAAUUGCUA
....(((.((....((((((((((((....((((.........))))(((((((...)))))))..............)))))))))))).....)-).)))........ ( -28.30)
>DroSec_CAF1 26438 109 - 1
ACCAGCAAAAUCUUGGAAGGGGAUAUAAAAGGUUUUCAAUCGCGGUCCAAGUACAUUGCACUUGUGAACUUGUUUUAAAUGUCCCCUUCUCUUCUU-UUUGCAAUCGCUA
....((((((....((((((((((((...((((((.(((..(((((........)))))..))).)))))).......)))))))))))).....)-)))))........ ( -33.10)
>DroSim_CAF1 14072 110 - 1
ACUAGCAAAAUCUUGGAAGGGGAUAUAAAAGGUUUUCAAUCGCGGUCCAAGUACAUUGCACUUGUGAACUUGUUUUAAAUGUCCCCUUCUCUUCUUUUUUGCAAUCGCUA
....((((((....((((((((((((...((((((.(((..(((((........)))))..))).)))))).......))))))))))))......))))))........ ( -32.50)
>consensus
ACUAGCAAAAUCUUGGAAGGGGAUAUAAAAGGUUUUCAAUCGCGGUCCAAGUACAUUGCACUUGUGAACUUGUUUUAAAUGUCCCCUUCUCUUCUU_UUUGCAAUCGCUA
....(((((.....((((((((((((...((((((.(((..(((((........)))))..))).)))))).......)))))))))))).......)))))........ (-28.65 = -29.10 +   0.45)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:38 2006