Locus 183

Sequence ID 4_DroMel_CAF1
Location 1,109,149 – 1,109,240
Length 91
Max. P 0.976596
window295 window296

overview

Window 5

Location 1,109,149 – 1,109,240
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 93.26
Mean single sequence MFE -19.77
Consensus MFE -18.82
Energy contribution -18.82
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.95
SVM decision value 0.77
SVM RNA-class probability 0.846784
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1109149 91 + 1281640
CUUUCAAGGCUUAGAUUCCUUGACUCAGUGAUGUUGUUAGUGUAUAAAUUCGUAUUUGAACGUUUUCACUACCUUAACUGAGUGACGCUAA
....(((((........)))))(((((((......(.(((((...(..((((....))))..)...))))).)...)))))))........ ( -19.60)
>DroSec_CAF1 22380 85 + 1
CUUUCAAGGCUUAGAUUCCUUGACUCAGUGAUGUUAUUAGUGUAUAAAUUCGUAUUUGAAAGUUUUCACUACCAUAACUGAGUGA------
....(((((........)))))(((((((.(((....(((((......((((....))))......))))).))).)))))))..------ ( -20.90)
>DroSim_CAF1 10025 85 + 1
CUUUCAAGGCUUAGAUUCCUUGACUCAGUGAUGUUAUUAGUGUAUAAAUUCGUAUUUGAAAGUUUUCACUACCUUAACUGAGUGA------
....(((((........)))))(((((((........(((((......((((....))))......))))).....)))))))..------ ( -18.82)
>consensus
CUUUCAAGGCUUAGAUUCCUUGACUCAGUGAUGUUAUUAGUGUAUAAAUUCGUAUUUGAAAGUUUUCACUACCUUAACUGAGUGA______
....(((((........)))))(((((((........(((((......((((....))))......))))).....)))))))........ (-18.82 = -18.82 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 1,109,149 – 1,109,240
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 93.26
Mean single sequence MFE -20.60
Consensus MFE -18.67
Energy contribution -18.67
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.19
Structure conservation index 0.91
SVM decision value 1.77
SVM RNA-class probability 0.976596
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1109149 91 - 1281640
UUAGCGUCACUCAGUUAAGGUAGUGAAAACGUUCAAAUACGAAUUUAUACACUAACAACAUCACUGAGUCAAGGAAUCUAAGCCUUGAAAG
.........((((((...(.(((((.....((((......)))).....)))))....)...))))))((((((........))))))... ( -19.80)
>DroSec_CAF1 22380 85 - 1
------UCACUCAGUUAUGGUAGUGAAAACUUUCAAAUACGAAUUUAUACACUAAUAACAUCACUGAGUCAAGGAAUCUAAGCCUUGAAAG
------...((((((.(((.(((((......(((......)))......)))))....))).))))))((((((........))))))... ( -23.10)
>DroSim_CAF1 10025 85 - 1
------UCACUCAGUUAAGGUAGUGAAAACUUUCAAAUACGAAUUUAUACACUAAUAACAUCACUGAGUCAAGGAAUCUAAGCCUUGAAAG
------...((((((...(.(((((......(((......)))......)))))....)...))))))((((((........))))))... ( -18.90)
>consensus
______UCACUCAGUUAAGGUAGUGAAAACUUUCAAAUACGAAUUUAUACACUAAUAACAUCACUGAGUCAAGGAAUCUAAGCCUUGAAAG
.........((((((...(.(((((......(((......)))......)))))....)...))))))((((((........))))))... (-18.67 = -18.67 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:32 2006