Locus 182

Sequence ID 4_DroMel_CAF1
Location 1,108,171 – 1,108,284
Length 113
Max. P 0.584842
window294

overview

Window 4

Location 1,108,171 – 1,108,284
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 82.05
Mean single sequence MFE -24.77
Consensus MFE -13.57
Energy contribution -14.45
Covariance contribution 0.88
Combinations/Pair 1.24
Mean z-score -2.23
Structure conservation index 0.55
SVM decision value 0.10
SVM RNA-class probability 0.584842
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1108171 113 - 1281640
---UAUUGUUACAUUGAGUGACCUGCAUUCUACAGGUUGACAAGCGAACAAAUAUUUAUACAUACAUAUUU----GAAAAUGUGUAAUAUACGUUUGUAAAUAAAUCGUUUAAUAUACAU
---..(((((...(((..(((((((.......))))))).)))...)))))(((((...((.....(((((----(.((((((((...)))))))).))))))....))..))))).... ( -19.70)
>DroSec_CAF1 21414 113 - 1
---UAUUAUUACAUUGAGUGACCUGCAUUCUACAGGUUGGAAAGCGAACAAAUACUUAUACAUACACAUAU----GAAAAUGUGUAAUAUACGUUUGUAAAUAAAUCAUUUAAUAUACAU
---.........(((((((((..(((.(((((.....))))).))).((((((...((((..(((((((..----....))))))).)))).)))))).......)))))))))...... ( -22.20)
>DroEre_CAF1 21345 120 - 1
UUGUAUUAUAACAUUGAGUGACCUGCAUUCUACAGGUUGACAAGAGUCCAAAUACUUGUACAUACAUAUGUAUAAGGAAAUGUGUGAAGUAUGUUUAUAGAUAAAUCAUAUAAUAUAGAC
(((((((((((((((....((((((.......))))))(((....)))......(((((((((....)))))))))..))))).(((..(((.(....).)))..))))))))))))).. ( -26.60)
>DroYak_CAF1 12253 117 - 1
UUGUAUUAUAACAUUGAGUGACCUGCAUUCUACAGGUUGACAAGCGACCAAAUACUUGUAUAUACAUAUAUCUAA---AAAGUGUGAUGUGCGUUUGUAGACAACUCAUAUAAUAUAGAU
((((((((((....(((((...(((((..(....(((((.....)))))........((((((.(((((......---...))))))))))))..)))))...))))))))))))))).. ( -30.60)
>consensus
___UAUUAUAACAUUGAGUGACCUGCAUUCUACAGGUUGACAAGCGAACAAAUACUUAUACAUACAUAUAU____GAAAAUGUGUAAUAUACGUUUGUAAAUAAAUCAUAUAAUAUACAU
............(((((((((((((.......))))...............(((..(((((((((((((..........))))))).))))))..))).......)))))))))...... (-13.57 = -14.45 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:30 2006