| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 188,529 – 188,649 |
| Length | 120 |
| Max. P | 0.714627 |
| Location | 188,529 – 188,649 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.25 |
| Mean single sequence MFE | -29.16 |
| Consensus MFE | -24.72 |
| Energy contribution | -24.96 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.714627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 188529 120 + 1281640 ACGUGGAACUUAUCCCGUUUGAACCCAAUACUACUGCAAAGUCAUUUGGACCUACGAUCUCGGUGCUUGACUUAGCAGUAACAAUGCUUUUGUACUCAGUUAUAUGUCCGCUUACUACAG ..(((((...(((..(...............((((((.((((((...(.(((.........))).).)))))).))))))((((.....)))).....)..)))..)))))......... ( -29.10) >DroSec_CAF1 15957 120 + 1 AUGUGGAACUCAUCCCGUUUGCGCCCAAUACUACUGCAAAGUCAUUUGGACCUACGAUCUCGGUGCUUGACUUAGCAGUAACAAUGUUUUUGUACUCAGUUACAUGUCCGCUUACUACAG .((((((.....))).((..(((..(.....((((((.((((((...(.(((.........))).).)))))).))))))...((((..(((....)))..)))))..)))..)).))). ( -31.50) >DroSim_CAF1 12718 120 + 1 AUGUGGAACUCAUCCCGUUUGCGCCCAAUACUACUGCAAAGUCAUUUGGACCUACGAUCUCGGUGCUUGACUUAGCAGUAACAAUGUUUUUGUACUCAGUUACAUGUCCGCUUACUACAG .((((((.....))).((..(((..(.....((((((.((((((...(.(((.........))).).)))))).))))))...((((..(((....)))..)))))..)))..)).))). ( -31.50) >DroEre_CAF1 17888 120 + 1 AUGUGGAACUCAUCCCGUUUGUACCUAAUACUACUGCAAACUCAUUUGGACCCACGAUCUCAGUGCUUGAUUUGGCAGUGACAAUGUUUUUGUACUCAGUUACAUGUCCGCUUACUACAG .(((((..........(((((((...........)))))))......((((........(((.((((......)))).)))..((((..(((....)))..)))))))).....))))). ( -27.20) >DroYak_CAF1 15078 120 + 1 AUGUGGAACUGAUCCCGUUUGUACCUAAUACUACUGCAAACUCAUUUGGACCCACAAUCUCGGUGCUUGAUUUGGCAGUGACAAUGUUUUUGUACUCAGUUACAUGUCCGUUUACUACAG .(((((..........(((((((...........)))))))......((((........(((.((((......)))).)))..((((..(((....)))..)))))))).....))))). ( -26.50) >consensus AUGUGGAACUCAUCCCGUUUGCACCCAAUACUACUGCAAAGUCAUUUGGACCUACGAUCUCGGUGCUUGACUUAGCAGUAACAAUGUUUUUGUACUCAGUUACAUGUCCGCUUACUACAG ..(((((........................((((((.((((((...(.(((.........))).).)))))).))))))...((((..(((....)))..)))).)))))......... (-24.72 = -24.96 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:30 2006