Locus 177

Sequence ID 4_DroMel_CAF1
Location 1,101,175 – 1,101,295
Length 120
Max. P 0.821444
window282

overview

Window 2

Location 1,101,175 – 1,101,295
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -25.94
Consensus MFE -21.30
Energy contribution -21.38
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -1.61
Structure conservation index 0.82
SVM decision value 0.68
SVM RNA-class probability 0.821444
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1101175 120 + 1281640
UCUUCUGAUCUAAAUUCUUACCACUGCUCCCAAAUGCAUUGUUUGGUAUCAUUCGUCCACCAUCGACUCGAUAUAUUGUUUCCCAAAUAAAUUGCUUUGGUAAAGGAUGAGAUACAUUAG
....(((((............((.(((........))).))....(((((..((((((...(((((..((((.((((........)))).))))..)))))...)))))))))))))))) ( -22.90)
>DroSec_CAF1 14965 120 + 1
UCUUCUGAUCUAAAUUCUUACCAUUGCUCCCAAAUGCAUUGUUUGGUAUCAUUCGUCCACCAUCGGCGCGAUAUAUUGUUUCCCAAAUAAAUUGCUUUGGUAAAGGAUUAGAUACAUUAG
.((..((((((((.(..((((((.(((........)))((((((((...((.((((((......)).)))).....))....)))))))).......))))))..).)))))).))..)) ( -26.90)
>DroSim_CAF1 5604 120 + 1
UCUUCUGAUCUAAAUUCUUACCAUUGCUCCCAAAUGCAUUGUUUGGAAUCAUUCUUCCACCAUCGGCGCGAUAUAUUGUUUCCCAAAUAAAUUGCUUUGGUAAAGGAUUAGAUACAUUAU
.....((((((((.(..((((((............((..((..(((((......))))).))...))(((((.((((........)))).)))))..))))))..).)))))).)).... ( -25.40)
>DroEre_CAF1 14400 120 + 1
UCUUCUGAUCUAAAUCCUUACCACUGCUGUCAAAUGCAUUGUUUGGUAUCAUUCGUCCACCAUCGGCACGAUAUAUUGUUUCCCAAAUAAAUUGCUUAGGCAAAGGAUGGGAUACAUUGG
.............(((((..((..((((.......(((((((((((...((.((((((......)).)))).....))....))))))))..)))...))))..))..)))))....... ( -26.00)
>DroYak_CAF1 6525 120 + 1
UCUUCUGAUCUAAAUCCUUACCACUGCUCUCAAAUGCAUUGUUUGGUAUCAUUCGUCCGCCAUCGGCACGAUAUAUUGUUUCCCAAAUGAAUUGCUUAGGUAAAGGAUGAGAUACAUUGG
.((..((((((..(((((((((..(((........)))(..(((((...((.(((((((....))).)))).....))....)))))..)........))).)))))).)))).))..)) ( -28.50)
>consensus
UCUUCUGAUCUAAAUUCUUACCACUGCUCCCAAAUGCAUUGUUUGGUAUCAUUCGUCCACCAUCGGCACGAUAUAUUGUUUCCCAAAUAAAUUGCUUUGGUAAAGGAUGAGAUACAUUAG
.....((((((..(((((((((..(((........)))((((((((...((.((((((......)).)))).....))....))))))))........))).)))))).)))).)).... (-21.30 = -21.38 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:13 2006