Locus 175

Sequence ID 4_DroMel_CAF1
Location 1,098,083 – 1,098,203
Length 120
Max. P 0.901115
window278

overview

Window 8

Location 1,098,083 – 1,098,203
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.08
Mean single sequence MFE -21.94
Consensus MFE -17.42
Energy contribution -17.98
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.93
Structure conservation index 0.79
SVM decision value 1.02
SVM RNA-class probability 0.901115
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1098083 120 + 1281640
AAAAGUAAUUUUGUUAUAGAAUUAGGUAAAAUAAGAUUGUGUUAUUACUUACGCUAAGGGCAACCACACUCAUCAACAACCAUUUUUGGCAAGUCUCGUUUAAUAAUACCAUCAUCACCA
.....((((((((...))))))))(((.......(((.(((((((((...(((....((....))..............(((....))).......))).))))))))).)))...))). ( -19.50)
>DroSec_CAF1 12800 120 + 1
AAAAGAAAUUUUGUUUUAGAAUUAGGUAAAAUAAAAUUGUGGUAUUACUUACGCUAAGGGCAACCACACUCAUCAACAACCAUUUUUGGCAAGUCUCGCUUAAUAAUACCAUCAUCACCA
....((((((((((((((........))))))))))))(((((((((.(((.((...((....))..............(((....)))........)).))))))))))))..)).... ( -24.90)
>DroSim_CAF1 2783 120 + 1
AAAAGAAAUUUUGUUUUAGAAUUAGGUAAAAUAAAAUUGUGGUAUUACUUACGCUAAGGGCAACCACACUCAUCAACAACCAUUUUUGGCAAGUCUCGCUUAAUAAUACCAUCAUCACCA
....((((((((((((((........))))))))))))(((((((((.(((.((...((....))..............(((....)))........)).))))))))))))..)).... ( -24.90)
>DroEre_CAF1 12240 120 + 1
UAAAGAAAUGUUGUAAAAAAAUUAUAUAAAGUUAGAUUGUGGUAUUACUUACGCUAAGGGCAACCACAUUCAUCAACAACCAUUUUUGGCAAGUCUCGUUUAAUAAUACCAUCAUCACCA
..................................(((.(((((((((.(((.((...((....))..............(((....)))........)).)))))))))))).))).... ( -20.80)
>DroYak_CAF1 4033 120 + 1
AAAAGAAAUUUUAUAAAAGUAUUAUUUAAAGUUAGUUAGUGGUAUUACUUACGCUAAGGGCAACCACACUCAUCAACAACCAUUUUUGGCAAGUCUCGCUUAAUAAUACCAUCAUCACCA
....(((((((((.............))))))).....(((((((((.(((.((...((....))..............(((....)))........)).))))))))))))..)).... ( -19.62)
>consensus
AAAAGAAAUUUUGUUAUAGAAUUAGGUAAAAUAAGAUUGUGGUAUUACUUACGCUAAGGGCAACCACACUCAUCAACAACCAUUUUUGGCAAGUCUCGCUUAAUAAUACCAUCAUCACCA
..................................(((.(((((((((.(((.((...((....))..............(((....)))........)).)))))))))))).))).... (-17.42 = -17.98 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:08 2006