Locus 174

Sequence ID 4_DroMel_CAF1
Location 1,093,449 – 1,093,559
Length 110
Max. P 0.786109
window277

overview

Window 7

Location 1,093,449 – 1,093,559
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 77.88
Mean single sequence MFE -21.17
Consensus MFE -13.97
Energy contribution -15.56
Covariance contribution 1.59
Combinations/Pair 1.41
Mean z-score -1.50
Structure conservation index 0.66
SVM decision value 0.57
SVM RNA-class probability 0.786109
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1093449 110 - 1281640
AAUUUACCCUGCAGUUUGGAAAAAUCUGGUCCAGCUUCUUUAGCCAAUUUAACAAUUUUAUCCGUAACUUGACGAGAUUUUUUUAAGCGUUCCUUGAUAUUUUCAGAAAU
.............((((((((((((((.(((..(((.....))).......((..........)).....))).)))))))))))))).....((((.....)))).... ( -20.10)
>DroPse_CAF1 46917 110 - 1
AUUUUAGUCUUCAGUUUCGAGAAAUCUGGAUGCGCUUCCUUCGCAAUUUUUACAAUCUGUUCCGAUUCUUGUCUUAAUUUUUCGAAGCGCUGCUUUAGCUUUUCCGUAAU
.............((((((((((((..(((((((.......))).........((((......))))...))))..))))))))))))((((...))))........... ( -22.30)
>DroSec_CAF1 7903 110 - 1
AAAUUCCCCUUCAGUUUGGAAAAAUCUGGUCCAGCUUCUUUAGCCAAUUUAACAAUUUUAUCCGUAACUUGGCGAGAUUUUUCUAAGCGUUUCUUGAUAUUUUCGGAAAA
...((((......((((((((((((((.(.((((((.....))).......((..........))....)))).)))))))))))))).......((.....)))))).. ( -25.20)
>DroEre_CAF1 8290 110 - 1
AAUUUUCCCUUAAUUUUGGACAAAUCUGGAGAAGCUUCUUUUGCCAAUUUAACAAUAUUAUCCGGUACUUGACGAGAUUUUUCCAAGCGUUCCUUAAUAUUUUUAGAAAU
...............((((.((((...((((...)))).))))))))(((((.(((((((...((..((((..(((....)))))))....)).))))))).)))))... ( -15.20)
>DroYak_CAF1 40 110 - 1
AAUUUUCCCUUCAUUUUGGAAAAAUCUGGAGAAGCUUCUUUGGCCAAUUUUACAAUUUUAUCCGAACCUUGAAGAGAUUUUUCCAAGCGUUCCUUAAUGAUUUUAGAAAU
...((((...(((((..((((.....((((((((.(((((..(.........................)..))))).))))))))....))))..))))).....)))). ( -21.91)
>DroPer_CAF1 43084 110 - 1
AUUUUAGUCUUCAGUUUCGAGAAAUCUGGAUGCGCUUCCUUCGCAAUUUUUACAAUCUGUUCCGAUUCUUGUCUUAAUUUUUCGAAGCGCUGCUUUAGCUUUUCCGUAAU
.............((((((((((((..(((((((.......))).........((((......))))...))))..))))))))))))((((...))))........... ( -22.30)
>consensus
AAUUUACCCUUCAGUUUGGAAAAAUCUGGACAAGCUUCUUUAGCCAAUUUAACAAUUUUAUCCGAAACUUGACGAGAUUUUUCCAAGCGUUCCUUAAUAUUUUCAGAAAU
.............((((((((((((((.((((((..((.........................))..)))))).))))))))))))))...................... (-13.97 = -15.56 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:06 2006