Locus 173

Sequence ID 4_DroMel_CAF1
Location 1,088,358 – 1,088,451
Length 93
Max. P 0.518975
window276

overview

Window 6

Location 1,088,358 – 1,088,451
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 94.98
Mean single sequence MFE -21.33
Consensus MFE -18.54
Energy contribution -18.77
Covariance contribution 0.23
Combinations/Pair 1.07
Mean z-score -1.84
Structure conservation index 0.87
SVM decision value -0.03
SVM RNA-class probability 0.518975
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1088358 93 - 1281640
UAUCAAGGAAUAAGUGGUGACUGGAAAAUUGCUUUUCAAACGAAGAUAAUUCCUGUUUUGCUUUUUCGAAAGAAGUUGAGAAGUAGUUUAUAA
..((.((..((.....))..)).))((((((((((((((...((((((.....))))))....((((....)))))))))))))))))).... ( -19.80)
>DroSim_CAF1 18960 93 - 1
UAUCAAGGAAUAAGUGGUGACUGGAAAAUUGCUUUUCAAACGAAGAUAGUUCCUGUUUUGCUUUUUCGAAAGAAGUUGAGAAGUAGUUUAUAA
..((.((..((.....))..)).))((((((((((((((...(((((((...)))))))....((((....)))))))))))))))))).... ( -21.30)
>DroYak_CAF1 25870 93 - 1
UAUCAAGGAAUAGAUGGUGACUGGAAAGUUGCUUCUCAAACGAAGAUAGUUCCCGUUUUGCUUUUUCGAAAGAAGUUGAGAAGUAGUUGAUAA
((((((............((((....))))((((((((((((..((....)).))).......((((....)))))))))))))..)))))). ( -22.90)
>consensus
UAUCAAGGAAUAAGUGGUGACUGGAAAAUUGCUUUUCAAACGAAGAUAGUUCCUGUUUUGCUUUUUCGAAAGAAGUUGAGAAGUAGUUUAUAA
..((.((..((.....))..)).))((((((((((((((...((((((.....))))))....((((....)))))))))))))))))).... (-18.54 = -18.77 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:05 2006