Locus 172

Sequence ID 4_DroMel_CAF1
Location 1,086,643 – 1,086,763
Length 120
Max. P 0.808734
window275

overview

Window 5

Location 1,086,643 – 1,086,763
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.78
Mean single sequence MFE -37.89
Consensus MFE -34.86
Energy contribution -35.19
Covariance contribution 0.34
Combinations/Pair 1.06
Mean z-score -1.96
Structure conservation index 0.92
SVM decision value 0.64
SVM RNA-class probability 0.808734
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1086643 120 + 1281640
GAACUUAAACAGCUGUUCGCAUCGCGAGCAGAUAAACAGUGGCUUGGUGUCCGGCAAAGUUAACGAAAAAGCUGGCAUUACGUCUAGCCUGCUGUUGCAGGCAAACUAUAUAAAGGAGUC
..((((......((((((((...))))))))......((((((.(((((.(((((...............)))))))))).)))..((((((....))))))..)))........)))). ( -39.36)
>DroSim_CAF1 17245 120 + 1
GAACUUAAACAGCUGUUCGCAUCGCGAGCAGAUAAACAGUGGCUUGGUAUCCGGCAGAGUCAACGAACGAGCUGGCAUUACGUCUAGUCUGCUGUUGCAGGCAAACUAUAUUAAGGAGUC
...(((((....((((((((...))))))))......((((((.((((..(((((...((......))..))))).)))).)))..((((((....))))))..)))...)))))..... ( -34.70)
>DroYak_CAF1 24152 120 + 1
GAACUUAAACAGCUGUUCGCAUCGCGAGCAGAUAAACAGUGGUUUGGUGUCCGGAAAAGUCAACGAGAAGGCUGGCAUUACAUCUAGCCUGCUGCUGCAGGCAAACUAUAUUAAGGAGUC
...(((((....((((((((...)))))))).......((((((((((((...(...((((........))))..)...)))))..((((((....))))))))))))).)))))..... ( -39.60)
>consensus
GAACUUAAACAGCUGUUCGCAUCGCGAGCAGAUAAACAGUGGCUUGGUGUCCGGCAAAGUCAACGAAAAAGCUGGCAUUACGUCUAGCCUGCUGUUGCAGGCAAACUAUAUUAAGGAGUC
...(((((....((((((((...))))))))......((((((.(((((.(((((...............)))))))))).)))..((((((....))))))..)))...)))))..... (-34.86 = -35.19 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:04 2006