Locus 17

Sequence ID 4_DroMel_CAF1
Location 185,130 – 185,250
Length 120
Max. P 0.724160
window30

overview

Window 0

Location 185,130 – 185,250
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.42
Mean single sequence MFE -28.45
Consensus MFE -26.56
Energy contribution -26.88
Covariance contribution 0.31
Combinations/Pair 1.12
Mean z-score -1.43
Structure conservation index 0.93
SVM decision value 0.41
SVM RNA-class probability 0.724160
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 185130 120 - 1281640
UUACGAGCUGAAGAAUGAAAACAAUUUUCUCCAUGGCUCUAUCUCGGAAAAAGUAUUAGACGAAGCCAGGUACAAUCUUGCCACUCACCUUAUGUCAAAUGGAGUGGAACUAAUAAUUAC
....((((((((((.((....)).))))).....)))))..............((((((.......((((......))))((((((...............))))))..))))))..... ( -21.76)
>DroSim_CAF1 9051 120 - 1
UUACGAGCUGAAUAAUGAAAAUAAUUUUUUAUAUGGCUCUGUCUCGGAAAAAGUAUUAGACGAAGCCAGGUACAAUCUUGCCACUCACGUUAUGUCAAAUGGAGUGGAACUAAUAAUUAC
...((((.((....(((((((....))))))).(((((.(((((.............))))).)))))....))..))))((((((.((((......))))))))))............. ( -26.72)
>DroEre_CAF1 14107 120 - 1
GUACGAGCUGGAUAACGAAAAUAAUUUGUUAUAUGGCUCCGUCUCGGCAAAAGUAUUAGACGAAGCCAGGUACAAUCUUGCCACUCACGUUAUGUCAAAUGGAGUGGAACUAAUAAUUGC
((((.......((((((((.....)))))))).(((((.(((((..((....))...))))).))))).)))).......((((((.((((......))))))))))............. ( -35.90)
>DroYak_CAF1 11190 120 - 1
CUUUGAGUUAGAUAACGAAAGUAAUUUGUUAUAUGGCUCUGUCUCGGAAAAAGUAUUAGACGAGGCCAGGUACAAUCUUGCCACUCAUGUUAUGUCAAAUGGAGUGGAACUAAUAAUUGC
....((((((.((((((((.....)))))))).)))))).((((((..............))))))((((......))))((((((.((((......))))))))))............. ( -29.44)
>consensus
UUACGAGCUGAAUAACGAAAAUAAUUUGUUAUAUGGCUCUGUCUCGGAAAAAGUAUUAGACGAAGCCAGGUACAAUCUUGCCACUCACGUUAUGUCAAAUGGAGUGGAACUAAUAAUUAC
....((((((.((((((((.....)))))))).))))))..............((((((.......((((......))))((((((.((((......))))))))))..))))))..... (-26.56 = -26.88 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:28 2006