| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 1,080,221 – 1,080,326 |
| Length | 105 |
| Max. P | 0.537101 |
| Location | 1,080,221 – 1,080,326 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 94.17 |
| Mean single sequence MFE | -27.90 |
| Consensus MFE | -23.53 |
| Energy contribution | -23.87 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1080221 105 + 1281640 UUUGUACGCUGUGCAAAGUUCUAAAUAUUGCCACAGUUUGCACAGUUUGGUUUUUACCGAAGUGAAAAAGGCAUGCGAUAGAU----AUUUAGGUACUGGUACAGUUAA .......(((((((..(((((((((((((......((.(((.((.((((((....)))))).))......))).))....)))----))))))).))).)))))))... ( -30.60) >DroSec_CAF1 12919 108 + 1 U-UGUACGCUGCGCAAAGUUCUAAAUAUUGCCACGGUUUUCACAGUUUGGUUUUUACCGAAGUGAAAAAGGCAUGCGAUAGAUAUAUAUUUAAGUACUGGUACAGUUAA (-((((((((......)))((((.....((((....(((((((..((((((....))))))))))))).)))).....)))).................)))))).... ( -25.30) >DroSim_CAF1 12453 108 + 1 U-UGUACGCUGCGCAAAGUUCUAAAUAUUGCCACGGUUUUCACAGUUUGGUUUUUACCGAAGUGAAAAAGGCAUGCGAUAGAUAUGUAUUUAAGUACUGGUACAGUUAA (-(((((.(((((((.............((((....(((((((..((((((....))))))))))))).)))))))).)))....((((....))))..)))))).... ( -27.81) >consensus U_UGUACGCUGCGCAAAGUUCUAAAUAUUGCCACGGUUUUCACAGUUUGGUUUUUACCGAAGUGAAAAAGGCAUGCGAUAGAUAU_UAUUUAAGUACUGGUACAGUUAA ..((((((((......)))((((.....((((....(((((((..((((((....))))))))))))).)))).....)))).................)))))..... (-23.53 = -23.87 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:57 2006