| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 1,074,135 – 1,074,228 |
| Length | 93 |
| Max. P | 0.965030 |
| Location | 1,074,135 – 1,074,228 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 95.74 |
| Mean single sequence MFE | -20.13 |
| Consensus MFE | -19.99 |
| Energy contribution | -20.10 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1074135 93 - 1281640 UUAGUCUAACUAUGGAGCAUU-UAUGUGGGCAGUUUUAUGGAAUCACGGCCUAAAAUAAAAAGAUAAUAUGAAAUAUAUUACUUUAGAGUUCCA ............((((((..(-(((.(((((.((((....))))....)))))..))))((((.(((((((...)))))))))))...)))))) ( -17.40) >DroSec_CAF1 7296 94 - 1 UUAGUCUAACUAUGGAGCAUUGCAUGUGGGCAGUUUUAUGAAAUCACUGCCUAAAAUAAAAAGAUAAUAUGAAAUAUAUUACUUUACAGUUCCA ............((((((........((((((((...........))))))))......((((.(((((((...)))))))))))...)))))) ( -21.50) >DroSim_CAF1 7016 94 - 1 UUAGUCUAACUAUGGAACAUUGCAUGUGGGCAGUUUUAUGAAAUCACUGCCUAAAAUAAAAAGAUAAUAUGAAAUAUAUUACUUUACAGUUCCA ............((((((........((((((((...........))))))))......((((.(((((((...)))))))))))...)))))) ( -21.50) >consensus UUAGUCUAACUAUGGAGCAUUGCAUGUGGGCAGUUUUAUGAAAUCACUGCCUAAAAUAAAAAGAUAAUAUGAAAUAUAUUACUUUACAGUUCCA ............((((((........((((((((...........))))))))......((((.(((((((...)))))))))))...)))))) (-19.99 = -20.10 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:55 2006