Locus 166

Sequence ID 4_DroMel_CAF1
Location 1,074,025 – 1,074,116
Length 91
Max. P 0.722618
window267

overview

Window 7

Location 1,074,025 – 1,074,116
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 94.14
Mean single sequence MFE -27.33
Consensus MFE -23.83
Energy contribution -25.17
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.87
SVM decision value 0.40
SVM RNA-class probability 0.722618
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1074025 91 - 1281640
AUGCGGAGGUAGUUCAGUAUAGUGAUAUGUGCACAAAUUAAUGCGCAGACGCUCCUGAAACGAACCGUCGUUGGCAAAAGUUUUCGAUUUA
.......(((..(((((...((((...((((((........))))))..)))).)))))....)))((((..(((....)))..))))... ( -23.00)
>DroSec_CAF1 7185 91 - 1
AUGCGGAGGUAGUUCAGGAUAGUGAUACGUGCACAAACUAGUGCGCAGACUCUCCUGAAACUUACCGUCGUUGGCAAAAGUUUUCGAUUUA
.......((((.(((((((.(((.....((((((......))))))..))).)))))))...))))((((..(((....)))..))))... ( -29.50)
>DroSim_CAF1 6905 91 - 1
AUGCGAAGGUAGUUCAGGAUAGUGAUACGUGCACAAACUAGUGCGCAGACUCUCCUGAAACUUACCGUCGUUGGCAAAAGUUUUCGAUUUA
.......((((.(((((((.(((.....((((((......))))))..))).)))))))...))))((((..(((....)))..))))... ( -29.50)
>consensus
AUGCGGAGGUAGUUCAGGAUAGUGAUACGUGCACAAACUAGUGCGCAGACUCUCCUGAAACUUACCGUCGUUGGCAAAAGUUUUCGAUUUA
.......((((.(((((((.(((.....((((((......))))))..))).)))))))...))))((((..(((....)))..))))... (-23.83 = -25.17 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:54 2006