Locus 163

Sequence ID 4_DroMel_CAF1
Location 1,064,946 – 1,065,058
Length 112
Max. P 0.935338
window263

overview

Window 3

Location 1,064,946 – 1,065,058
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.37
Mean single sequence MFE -19.48
Consensus MFE -5.30
Energy contribution -5.34
Covariance contribution 0.04
Combinations/Pair 1.27
Mean z-score -2.36
Structure conservation index 0.27
SVM decision value 1.24
SVM RNA-class probability 0.935338
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1064946 112 - 1281640
C-AUAAAUUUCCUCAAGCUUACGAAAACCAGGUAGUUUCCCUA-AAAC--UAGUGGAAAUUACCAGUUUUAACACAUUAAUUGUA-A---ACCUCAUACUUAAAUGUAUCGUUAAUAUAA
.-..................((((......(((((((((((((-....--))).)))))))))).........(((((....(((-.---......)))...))))).))))........ ( -20.80)
>DroSec_CAF1 12563 114 - 1
CCUUAAAUUUCCUCAAUAUUACGAAAACCACGUAGUUUCCCUAGAAAC--UAGAGGAAAUAACCAGUUUUAAUACAUUAAUUGUA-A---UCCUAAUACUUAAAUGUAUUGUUAAAAUAA
......((((((((.....((((.......))))(((((....)))))--..)))))))).....(((((((((((.....))))-.---...((((((......))))))))))))).. ( -23.20)
>DroSim_CAF1 6908 114 - 1
CCUUAAAUUUCCUCAAGAUUACGAAAACCACGUAGUUUCCCUAGAAAC--UAGAGGAAAUAACCAGUUUUAAUACAUUAAUUGUA-A---UCCUAAUACUUAAAUGUAUUGUUAAAAUAA
......((((((((.....((((.......))))(((((....)))))--..)))))))).....(((((((((((.....))))-.---...((((((......))))))))))))).. ( -23.20)
>DroEre_CAF1 13359 119 - 1
CCUUAAAUUUGCUCAAGAUUCCGAGAAGCCUAUAGUUUCUCUAAAAACUUUAGUAAAAAUGGCCAGUUUUUAUAAAUUGAUUCUAUCAUUACCUAAUAUUUAAACGUAAUGUUAAAA-AU
.......((((((.(((.....(((((((.....)))))))......))).))))))......((((((....)))))).......((((((.............))))))......-.. ( -17.42)
>DroYak_CAF1 11496 118 - 1
CCUUAAAUUAGCUUACUAUUACUAGAAGCCGAUAGUUUCUCUAAAAA-UUUGGUAAAAAUUUCCAGUUUAAAUUAAUUGAUUGUA-CAUUACCCAACACAUAAACGUAUUGUUAAAAUAA
.......(((((.(((.......((((((.....)))))).......-...(((((.......(((((......)))))......-..)))))............)))..)))))..... ( -12.76)
>consensus
CCUUAAAUUUCCUCAAGAUUACGAAAACCACGUAGUUUCCCUAAAAAC__UAGUGGAAAUAACCAGUUUUAAUACAUUAAUUGUA_A___ACCUAAUACUUAAAUGUAUUGUUAAAAUAA
..................................(((((((((.......))).)))))).................................((((((......))))))......... ( -5.30 =  -5.34 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:46 2006