Locus 161

Sequence ID 4_DroMel_CAF1
Location 1,039,009 – 1,039,112
Length 103
Max. P 0.734438
window260

overview

Window 0

Location 1,039,009 – 1,039,112
Length 103
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 79.45
Mean single sequence MFE -23.50
Consensus MFE -15.65
Energy contribution -16.02
Covariance contribution 0.36
Combinations/Pair 1.33
Mean z-score -1.53
Structure conservation index 0.67
SVM decision value 0.43
SVM RNA-class probability 0.734438
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1039009 103 - 1281640
UUCAGUAUACUUCUAGAUCGCCCAAUUUGACAGCAACUUUCGCUGUAAUAUGGGGCGGGUCGAAGCCACUUGACAAUCCUCAUAAUAUACAUGGUGAGUUGU--A
...(((...((((....((((((......(((((.......)))))......))))))...))))..)))..((((..(((((..........)))))))))--. ( -27.00)
>DroVir_CAF1 6286 100 - 1
UUCAGUACACAUCACGAUCACCGAACCUAACCGCAACUUUUGCAGUUAUAUGGGGCGGAUCGAAGCCUCUCGACAAUCCUCAUAAUAUUCACGGUAAGUC-----
...................((((....((((.(((.....))).))))(((((((..(.((((......)))))...))))))).......)))).....----- ( -21.30)
>DroGri_CAF1 4033 100 - 1
UUCAAUACACAUCGCGAUCCCCGAAUUUAACUGCAACUUUUGCGGUCAUUUGGGGCGGCUCCAAACCUCUUGAUAACCCGCAUAAUAUUCACGGUAAGUC-----
..........((((.((..(((((((...((((((.....)))))).)))))))((((...(((.....))).....)))).......)).)))).....----- ( -24.40)
>DroYak_CAF1 5081 103 - 1
UUCAGUACACUUCUAGAUCGCCAAAUUUGACAGCAACUUUUGCUGUUAUAUGGGGUGGAUCCAAGCCACUUGACAAUCCUCAUAACAUACAUGGUAAGUUGU--A
.....(((((((((((((((((..((.((((((((.....)))))))).))..))).))))((((...))))...................))).))).)))--) ( -24.00)
>DroMoj_CAF1 6639 105 - 1
UCCAAUACACUUCACGUUCACCGAAUUUGACAGCCACUUUUGCUGUCAUCUGGGGUGGUUCGAAACCCCUUGACAAUCCUCAUAAUAUUCACGGUAAGUCAGAAA
...................((((....(((((((.......)))))))((.(((((........)))))..))..................)))).......... ( -24.30)
>DroAna_CAF1 4926 103 - 1
UUCAAUAUACUUCUAGAUCGCCAAAUUUAACCGCUACUUUUGCUGUCAUAUGGGGUGGUUCUAAACCUUUAGACAAUCCCCAUAAUAUUCAUGGUAAGCCAA--A
...(((((.......(((.((.(((..((.....))..))))).))).(((((((..((.((((....))))))...))))))))))))..(((....))).--. ( -20.00)
>consensus
UUCAAUACACUUCUAGAUCGCCGAAUUUAACAGCAACUUUUGCUGUCAUAUGGGGCGGAUCGAAACCUCUUGACAAUCCUCAUAAUAUUCACGGUAAGUC____A
...................((((......(((((.......)))))..(((((((..(.((((......)))))...))))))).......)))).......... (-15.65 = -16.02 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:42 2006