Locus 156

Sequence ID 4_DroMel_CAF1
Location 1,005,133 – 1,005,253
Length 120
Max. P 0.873345
window249

overview

Window 9

Location 1,005,133 – 1,005,253
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 98.06
Mean single sequence MFE -35.83
Consensus MFE -33.69
Energy contribution -34.00
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -2.21
Structure conservation index 0.94
SVM decision value 0.88
SVM RNA-class probability 0.873345
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1005133 120 + 1281640
GCUUCUUUGCUUCUACCAGAAACACAUCCCUAGCUCUACAAAUAUAUUUCGGUCUGCUCCUGGACCUGACCCUUUUUGUAUGUUUGACUUGGCUUUGGGGUGUCGUCUAUGGACGCGUGC
........((.((((..(((...(((((((.((((...(((((((((.(((((((......))))).))........)))))))))....))))..)))))))..))).)))).)).... ( -34.50)
>DroSec_CAF1 44560 120 + 1
GCUUCUUUGCUUCUACCAGAAACACAUCCCUAGCUCUACAAAUAUAUUUCGGUCUGCUCCUGGACCUGACCCUUUUUGUAUGUUUGACUUGGCUUUGGGGUGUCGUCUAUGGACGCGUGC
........((.((((..(((...(((((((.((((...(((((((((.(((((((......))))).))........)))))))))....))))..)))))))..))).)))).)).... ( -34.50)
>DroEre_CAF1 47646 120 + 1
GCUUCUUUGCUUCCACCAGAAACACAUCCCUAGCUCUACAAAUAUAUUUCGGUCUGCUCCUGGACCUGACCCUUUUUGAAUGUUUGACUUGAGUUUGGGGUGUCGUCUAUGGACGCGUGC
........((.((((..(((...(((((((.(((((..(((((((.....(((((......))))).....(.....).)))))))....))))).)))))))..))).)))).)).... ( -36.40)
>DroYak_CAF1 45228 120 + 1
GCUUCUUUGCUUCCACCAGAAACACAUCCCUAGCUCUACAAAUAUAUUUCGGUCUGCUCCUGGACCUGACCCUUUUUGUAUGUUUGACUUGGGUUUGGGGUGUCGUCUAUGGACGCGUGC
........((.((((..(((...(((((((.(((((..(((((((((.(((((((......))))).))........)))))))))....))))).)))))))..))).)))).)).... ( -37.90)
>consensus
GCUUCUUUGCUUCCACCAGAAACACAUCCCUAGCUCUACAAAUAUAUUUCGGUCUGCUCCUGGACCUGACCCUUUUUGUAUGUUUGACUUGGCUUUGGGGUGUCGUCUAUGGACGCGUGC
........((.((((..(((...(((((((.(((((..(((((((((.(((((((......))))).))........)))))))))....))))).)))))))..))).)))).)).... (-33.69 = -34.00 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:27 2006