| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 1,001,996 – 1,002,114 |
| Length | 118 |
| Max. P | 0.780405 |
| Location | 1,001,996 – 1,002,114 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.39 |
| Mean single sequence MFE | -23.46 |
| Consensus MFE | -18.45 |
| Energy contribution | -18.77 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.780405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1001996 118 - 1281640 CUUCUUUGUUAAUUUCCCGUGCACACGCACACUCUUCCCUUUCUAUUACCGCUUUAUAAGGGCAAGCGCAGUUAGGUCCGAGAAUAUAUA--UAUACACACUCUCAGUCCCUUGACGAAC ....((((((((......((((....)))).(.((((((((................))))).))).)......((.(.((((.......--.........)))).).)).)))))))). ( -20.78) >DroSec_CAF1 41407 110 - 1 CUUCUUUAUUAAUUUCCCGUGCACACGCACACUCUUCCCUUCCCAUUACCACUUAAUAAGGGCAAGAGCAGUUAGGUCCGAGGA----------UACACACUUUUAGUCCCUUGACGAAC .(((....((((((....((((....)))).((((((((((...((((.....))))))))).))))).))))))(((...(((----------(...........))))...)))))). ( -22.20) >DroEre_CAF1 42821 116 - 1 CUCCUUUGUUAAUUUCCCGUGCACACGCACACUCUUCCCAUCCCAUUACCACUUAAUAAGGGCAAGAGUAGUUACGGCCGAGGAU----AUAUACACACACUUUCAGUCCCUUGACGAAC .(((((.(((........((((....))))(((((((((....................))).))))))......))).))))).----.............(((.(((....)))))). ( -24.25) >DroYak_CAF1 41284 120 - 1 CUCCUUUCUUAAUUUCCUGUGCACACGCACACUCUUCCCUUCCCAUUACCACUUAAUAAGGGCAAGAGCAGUUAGGUCCGAGGAUACAUAUAUACACACACUUUUAGUCCCUUGACGAAC .(((((.(((((((...(((((....)))))((((((((((...((((.....))))))))).))))).)))))))...)))))......................(((....))).... ( -26.60) >consensus CUCCUUUGUUAAUUUCCCGUGCACACGCACACUCUUCCCUUCCCAUUACCACUUAAUAAGGGCAAGAGCAGUUAGGUCCGAGGAU____A__UACACACACUUUCAGUCCCUUGACGAAC .(((((..((((((....((((....)))).((((((((((................))))).))))).))))))....)))))......................(((....))).... (-18.45 = -18.77 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:22 2006