Locus 152

Sequence ID 4_DroMel_CAF1
Location 1,001,523 – 1,001,643
Length 120
Max. P 0.680073
window245

overview

Window 5

Location 1,001,523 – 1,001,643
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.47
Mean single sequence MFE -21.89
Consensus MFE -17.16
Energy contribution -16.79
Covariance contribution -0.37
Combinations/Pair 1.12
Mean z-score -2.04
Structure conservation index 0.78
SVM decision value 0.30
SVM RNA-class probability 0.680073
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1001523 120 - 1281640
CGUCCCGCCCUUUAACCAUCGAAUACAAAUACAAAAAUCGUAUACAUUUAUUCAUGCACAAAUCCACACACAAUGCAUAAUUUUAAUUGUUCGCUUCAAGGGUAGCGCUCAACUCUACUC
.((.(..(((((.((....((((((...((((.......))))..........(((((...............))))).........)))))).)).)))))..).))............ ( -16.36)
>DroSec_CAF1 40907 120 - 1
CGUCCCGCCCUUGAAGCAUCGAAUACAAAUACAAAAAUCGUACAUAUUUAUUCAUGCACAAAUCCACACACAAUGCAUAAUUUUAAUUGUUUGCUUCAAGGGUAGCGCUCAACUCUACUC
.((.(..(((((((((((..(((((....(((.......)))......)))))(((((...............))))).............)))))))))))..).))............ ( -27.36)
>DroEre_CAF1 41809 120 - 1
CGUCCCGCCCUUUAACCAGCGAAUACAUACACGAAGAUCGUGCACAUUUAUUCAUGCACAAAUCCACACACAAUGCAUAAUUUUAAUUGUUUGCUUCAAGGGUAGCGCUCAACUCUCCUC
.((.(..(((((.....((((((((....((((.....))))...........(((((...............))))).........))))))))..)))))..).))............ ( -22.86)
>DroYak_CAF1 40816 120 - 1
CGUCCCGCCCUUUAACCGGCGAAUACGAACACAAAGAUCGUGCACAUUUAUUCAUGCACAAAUCCACACACAAUGCAUAAUUUUAAUUGUUUGCUUCAAGGGUAGCGCUCAACUCUCCUC
.((.(..(((((.....((((((((.((.(.....).))(((((..........)))))............................))))))))..)))))..).))............ ( -21.00)
>consensus
CGUCCCGCCCUUUAACCAGCGAAUACAAACACAAAAAUCGUACACAUUUAUUCAUGCACAAAUCCACACACAAUGCAUAAUUUUAAUUGUUUGCUUCAAGGGUAGCGCUCAACUCUACUC
.((.(..(((((.....((((((((....(((.......)))...........(((((...............))))).........))))))))..)))))..).))............ (-17.16 = -16.79 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:21 2006