Locus 150

Sequence ID 4_DroMel_CAF1
Location 993,819 – 993,939
Length 120
Max. P 0.996063
window239

overview

Window 9

Location 993,819 – 993,939
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -24.10
Consensus MFE -23.14
Energy contribution -23.30
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -1.89
Structure conservation index 0.96
SVM decision value 2.65
SVM RNA-class probability 0.996063
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 993819 120 - 1281640
UACUUUAUAACUUUUUUGCUAACCUUAUUAUCUCUAACGAAAUGGUCUCCAGGGACAGGCUCCUUUUCAAUUAUGCUAUUCUCACGCAUUCUAUAAUUGAAUAAGGGAGUUUUCACGUUA
..................................(((((.....((((....))))(((((((((((((((((((..((.(....).))..)))))))))..))))))))))...))))) ( -24.00)
>DroSec_CAF1 32883 119 - 1
UACUUUAUAACUU-UUUGCUAACCUUAUUAUCUCUAACGAAAUGGUCUCCAGGGACAGGCUCCUUUUCAAUUAUGCUGUUCUCACGCAUUCUAUAAUUGAAUAAGGGAGUUUUCACGUUA
.............-....................(((((.....((((....))))(((((((((((((((((((.(((......)))...)))))))))..))))))))))...))))) ( -25.00)
>DroSim_CAF1 27593 119 - 1
UACUUUAUAACUU-UUUGCUAACCUUAUUAUCUCUAACGAAAUGGUCUCCAGGGACAGGCUCCUUUUCAAUUAUGCUGUUCUCACGCAUUCUAUAAUUGAAUAAGGGAGUUUUCACGUUA
.............-....................(((((.....((((....))))(((((((((((((((((((.(((......)))...)))))))))..))))))))))...))))) ( -25.00)
>DroEre_CAF1 31320 120 - 1
UACUUUAUAACUUUUUUGCUAACCUUAUUAUCUCUAACGAAAUGGUCUCCAGGGACAGGCUCCUUUUCAAUUAUGCUAUUCACACGCAUUCUAUAAUUGAAUAAGGGAGUUUUCACGUUA
..................................(((((.....((((....))))(((((((((((((((((((..((.(....).))..)))))))))..))))))))))...))))) ( -24.10)
>DroYak_CAF1 29652 120 - 1
UACUUUAUAACUUUUUUGCUAACCUUAUUAUCUCUAACGAAAUGGUCUCCAGGGACUGGCUCCUUUUCAAUUAUGCUAUUCACACGCAUCCUAUAAUUGAAUAAGGGAGUUUUCACGUAA
...............((((...(((.(((((.((....)).)))))....)))((..((((((((((((((((((..((.(....).))..)))))))))..))))))))).))..)))) ( -22.40)
>consensus
UACUUUAUAACUUUUUUGCUAACCUUAUUAUCUCUAACGAAAUGGUCUCCAGGGACAGGCUCCUUUUCAAUUAUGCUAUUCUCACGCAUUCUAUAAUUGAAUAAGGGAGUUUUCACGUUA
..................................(((((.....((((....))))(((((((((((((((((((..((.(....).))..)))))))))..))))))))))...))))) (-23.14 = -23.30 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:13 2006