Locus 146

Sequence ID 4_DroMel_CAF1
Location 977,448 – 977,538
Length 90
Max. P 0.534325
window231

overview

Window 1

Location 977,448 – 977,538
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 84.03
Mean single sequence MFE -26.43
Consensus MFE -18.77
Energy contribution -19.72
Covariance contribution 0.95
Combinations/Pair 1.12
Mean z-score -1.88
Structure conservation index 0.71
SVM decision value 0.00
SVM RNA-class probability 0.534325
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 977448 90 - 1281640
ACAUCCCGCCAAGAAAGGCGGAUUGGUAGCGGUCGGCUGUUGCCAAGAAGUGAUAAUUGGGAUUACAAAAACGAAAAGACC---GUAGAAGCC
.((..(((((......)))))..))...(((((((((....))).....(((((.......)))))...........))))---))....... ( -29.60)
>DroSec_CAF1 12032 90 - 1
ACAUCCCGCCAAGAAAGGCGGAUUGGUAGCGGUCGGCUGUUGCCAAGAAGUGAUAAUUGGGAUUACAAAAACCAGAAGACC---GUAGAAGCC
.((..(((((......)))))..))...(((((((((....)))............((((...........))))..))))---))....... ( -29.80)
>DroSim_CAF1 9763 89 - 1
ACAUCCCGCCAAGAAAGGCGGAUUGGUAGCGGUCGGCUGUUGCCAAGAAGUGAUAAUUGGGAUUACAAAAACCAGAAGACC---GU-GAAGCC
.....(((((......)))))...(((.(((((((((....)))............((((...........))))..))))---))-...))) ( -30.30)
>DroEre_CAF1 13166 90 - 1
ACAUCCCGUCAAGAAAGGCGAAUUGGUAGCGGUCGCCUGUUGCCAAGAAGUGAUAAUUGGGAAUACAAAAACCAGAACACC---AUGGAAGCC
...(((((((......)))...((((((((((....))))))))))............)))).........(((.......---.)))..... ( -23.70)
>DroWil_CAF1 70798 93 - 1
UCAGCGCGCCACGAGCGUCGUAUUGGCAGUGGUCGACUCUUGCCUCGGAACGAUAAUUGGGAGUUUAAAAAACAGGAGACUGACACGGACUCC
...........(((..(((((...(((((.((....)).))))).....)))))..)))(((((((......(((....)))....))))))) ( -25.80)
>DroYak_CAF1 11867 90 - 1
ACAUCCCGCCAAGAAAGGCGUAUUGGAAGCGGUCGCCUGUUGCCAAGAAGUGAUAAUUGGGAGUACAAAAAGCAGAACACC---AUAGAAACC
((.(((((((......)))...((((.(((((....))))).))))............)))))).................---......... ( -19.40)
>consensus
ACAUCCCGCCAAGAAAGGCGGAUUGGUAGCGGUCGGCUGUUGCCAAGAAGUGAUAAUUGGGAUUACAAAAACCAGAAGACC___AUAGAAGCC
...(((((((......)))...((((((((((....))))))))))............))))............................... (-18.77 = -19.72 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:51 2006