Locus 145

Sequence ID 4_DroMel_CAF1
Location 972,233 – 972,333
Length 100
Max. P 0.654925
window230

overview

Window 0

Location 972,233 – 972,333
Length 100
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 80.82
Mean single sequence MFE -28.72
Consensus MFE -17.78
Energy contribution -17.87
Covariance contribution 0.09
Combinations/Pair 1.46
Mean z-score -1.79
Structure conservation index 0.62
SVM decision value 0.25
SVM RNA-class probability 0.654925
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 972233 100 + 1281640
GUUGGUGAUGAAAUCCUCUCAUCUCUCUGGUAGCUAGGAGAUGUGAGGCUGUUUGCUUUGAUCACAUUACCGGAAUCGGAGCUGUCAGAAAAACCUU-AAA
...(((........((((.((((((.((((...)))))))))).))))(((...((((((((..(......)..))))))))...)))....)))..-... ( -33.80)
>DroVir_CAF1 7189 101 + 1
GUUUUAGGCGAUAAACGUUCAUCUCUGUGAUAGUUCAUGGGACCGAGACUAUUAUUUUUUAUUAAAUUUGCCGACUCGGAGCCUUCGGGGACACCUAUGUG
.....((((............((.((((((....))))))))(((((......((((......)))).......))))).))))..(((....)))..... ( -20.82)
>DroSec_CAF1 7865 100 + 1
GUUGGAGAUGAAAUCCUCUCAUCUCUCUGGUAGCUAGGAGAUGUGAGGCUAUUAGUUUUGAUCACAUUACCGGAAUCGGAGCUAUCAGAAAAACCUU-AAA
....(((((((.......)))))))((((((((((....((((((((((.....)))....))))))).(((....)))))))))))))........-... ( -32.20)
>DroSim_CAF1 5269 100 + 1
GUUGGAGAUGAAAUCCUCUCAUCUCUCUGGUAGCUAGGAGAUGUGAGGCUAUUAGUUUUGAUCACAUUACCGGAAUCGGAGCUGUCAGAAAAACCUU-AAA
....(((((((.......)))))))((((..((((....((((((((((.....)))....))))))).(((....)))))))..))))........-... ( -30.20)
>DroEre_CAF1 8266 101 + 1
GUUGGUGAUGAAAUCCUAUCAUCCCUCUGGUAGCUAGGAGACGUGAGGCUAUUAGUUUUGAUCACAUUACCAGAGUCGGAGCUGUCAGAGAAACCUUGAAA
...((((((((.......))))).(((((..((((.(....)....((((....((..((....))..))...))))..))))..)))))..)))...... ( -28.10)
>DroYak_CAF1 6773 101 + 1
GUUGGUGAAGAAAUCCUAUCAUCCCUCUGAUAGCUAGGAGACGUGAGGCUAUUAGUUUGGAUGACGUUACCAGAAUCGGAGCUAUCAGAAAAACCUUGAAA
.(((((((((.....)).((((((..(((((((((.(....)....)))))))))...))))))..)))))))..((.((....)).))............ ( -27.20)
>consensus
GUUGGAGAUGAAAUCCUCUCAUCUCUCUGGUAGCUAGGAGAUGUGAGGCUAUUAGUUUUGAUCACAUUACCGGAAUCGGAGCUGUCAGAAAAACCUU_AAA
......(((((.......)))))..((((((((((.((..(((((((((.....)))....))))))..))........))))))))))............ (-17.78 = -17.87 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:48 2006