| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 968,290 – 968,397 |
| Length | 107 |
| Max. P | 0.951631 |
| Location | 968,290 – 968,397 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 93.75 |
| Mean single sequence MFE | -21.57 |
| Consensus MFE | -21.01 |
| Energy contribution | -20.79 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.951631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 968290 107 - 1281640 UUUGAACUAACAUAUUUUUACCAUAUACGUAUUUGUAAAAUAAUGUCAAAAGGUUAUGAUACGUAGUUCACACAUAAGUAUUUUACCAUUUUACAGAUAUGUUGUGA .....................((((.(((((((((((((((..........(((...(((((...............)))))..)))))))))))))))))))))). ( -20.66) >DroSec_CAF1 4056 106 - 1 -UCAAACUAACAAAUUUUAAACAUAUACGUAUUUGUAAAAUAAUGUUAGAAGGUUAUGAUACGUAGUUCACACUUAAGUAUUUUACCAUUUUGCAGAUAUGUUGUGA -....................((((.(((((((((((((((..........(((...(((((..(((....)))...)))))..)))))))))))))))))))))). ( -23.20) >DroSim_CAF1 1405 106 - 1 -UCAAACUAACAAAUUUUAAACAUAUACGUAUUUGUAAAAUAAUGUUAGAAGGUUAUGAUACGUAGUUCACACAUAAGUAUUUUACCAUUUUGCAGAUAUGUUGUGA -....................((((.(((((((((((((((..........(((...(((((...............)))))..)))))))))))))))))))))). ( -20.86) >consensus _UCAAACUAACAAAUUUUAAACAUAUACGUAUUUGUAAAAUAAUGUUAGAAGGUUAUGAUACGUAGUUCACACAUAAGUAUUUUACCAUUUUGCAGAUAUGUUGUGA .....................((((.(((((((((((((((..........(((...(((((...............)))))..)))))))))))))))))))))). (-21.01 = -20.79 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:44 2006