Locus 143

Sequence ID 4_DroMel_CAF1
Location 966,864 – 966,959
Length 95
Max. P 0.779835
window228

overview

Window 8

Location 966,864 – 966,959
Length 95
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 69.21
Mean single sequence MFE -20.87
Consensus MFE -11.48
Energy contribution -10.60
Covariance contribution -0.88
Combinations/Pair 1.31
Mean z-score -1.64
Structure conservation index 0.55
SVM decision value 0.55
SVM RNA-class probability 0.779835
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 966864 95 - 1281640
UGUGUAUUUCUCUAAGUCCUUGCU-----------------------UUCACCUACACCGUCUUAUUUUGUUGCACAGUGUUUUGAAGUGAGAUUUUUCCUCACGAUUAAUCUUACUU
((((((......((((.(..((..-----------------------........))..).))))......))))))........((((((((((..((.....))..)))))))))) ( -17.40)
>DroSec_CAF1 2932 118 - 1
UAUGUAUUUCUCUAAGUCCUUGGUUCAGGAGUCAGAUUCGCCAUGUGUUAACCUAUACUGUCUUAUUUUAUUGCACAGUGUUUUAAAGUGGGAUUUUUCCUCACGAUUAAUCUUACUU
((((......(((.(.((((......)))).).))).....)))).........((((((((..........).)))))))....((((((((((..((.....))..)))))))))) ( -21.00)
>DroYak_CAF1 3357 113 - 1
U----AUUUCUCUAUAUCCUUGCAUUAGGGACCAGAUUCGCAAAUUGUGCAUUAAAAUUGUCUCAUUUUGUAGCACAGUGUUAUAAAGUGAGAUU-UUCCUCGCUAUUUAUUUUACUU
.----................((...(((((........(((.....))).........(((((((((((((((.....))))))))))))))).-))))).)).............. ( -24.20)
>consensus
U_UGUAUUUCUCUAAGUCCUUGCUU_AGG___CAGAUUCGC_A__UGUUCACCUAAACUGUCUUAUUUUGUUGCACAGUGUUUUAAAGUGAGAUUUUUCCUCACGAUUAAUCUUACUU
...........................................................(((((((((((..((.....))..)))))))))))........................ (-11.48 = -10.60 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:39 2006