| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 172,876 – 172,976 |
| Length | 100 |
| Max. P | 0.655011 |
| Location | 172,876 – 172,976 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 79.02 |
| Mean single sequence MFE | -20.15 |
| Consensus MFE | -15.27 |
| Energy contribution | -14.90 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.655011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 172876 100 - 1281640 AAAUAU-----AUUUGCUUCAGAUGUUUCUGGAAGACUACUUGUCUUCGAUUUUUUAAUGUGUCUUGAAUGAUUUUUUCGAGCAGAUUUUGCUUGUUGUAUUUCU ((((((-----(...((..((((....))))((((((.....))))))........(((.((.((((((.......)))))))).)))..))....))))))).. ( -22.60) >DroSec_CAF1 12171 100 - 1 AAAGAU-----AUUUGCUUCAGAUUUUUCUGGAAGACUACUUGUCUUCGAUUUUUGAACGAAUCCUGCAUGAUUUUGCCGAGCAGAGUUUGCUUGUUGUAUUUCU ((((((-----........((((....))))((((((.....)))))).))))))..((((.....(((.((((((((...)))))))))))...))))...... ( -23.10) >DroEre_CAF1 9065 105 - 1 ACAUCUGGUGAUUUUGUUUCAGAUUUUUCUGGAAGGAUAUUUGUCUUUGAUUUUUUAACGAAUCUUGAAUGAUUUUGCUGAGCAGAUUUAGAUUGUUGUAUUUGA .((...((..(..((.(((((((....))))))).))...)..))..))......((((.(((((.....((.(((((...))))).)))))))))))....... ( -17.30) >DroYak_CAF1 13870 93 - 1 ------------UUUGCUUCAGUUUUUUCUGGAAGGCUAUUUGUCUUUAAUUUUUUAACAAGUCUUGACUGAUUUUGCUGAGCAGAUUUAGGUUCUUGUAUUUGA ------------.......(((......)))((((((.....)))))).........(((((......((((.(((((...))))).))))...)))))...... ( -17.60) >consensus AAAUAU_____AUUUGCUUCAGAUUUUUCUGGAAGACUACUUGUCUUCGAUUUUUUAACGAAUCUUGAAUGAUUUUGCCGAGCAGAUUUAGCUUGUUGUAUUUCA ............(((((((((((....))))((((((.....))))))...........(((((......)))))....)))))))................... (-15.27 = -14.90 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:14 2006