Locus 139

Sequence ID 4_DroMel_CAF1
Location 937,386 – 937,494
Length 108
Max. P 0.990230
window220

overview

Window 0

Location 937,386 – 937,494
Length 108
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 81.16
Mean single sequence MFE -26.10
Consensus MFE -19.78
Energy contribution -19.50
Covariance contribution -0.28
Combinations/Pair 1.20
Mean z-score -2.64
Structure conservation index 0.76
SVM decision value 2.20
SVM RNA-class probability 0.990230
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 937386 108 - 1281640
GUAUUAGUUUCCAUCC-----U--CUCCUUUAGUCAUAAUAUCCUAUAUUAUAGGAUACAUAUAUUCAUUUAUAUAAAGUCGAUGGUAAUUGAUACACUUUUGCUGGC---CGACUAA
(((((((((.(((((.-----.--((.............((((((((...)))))))).(((((......)))))..))..))))).)))))))))............---....... ( -24.50)
>DroSec_CAF1 1674 110 - 1
GUAUUAGUUUCCAUCC-----UCCCUCAUGUAGUCAUAAUAUCCUAUAAUUUAGGAUACAUGUAUUCGUUUAUAUAAAAUCGAUGGUUAUUGAUACACUUUUGCUGGC---CGACUAA
((((((((..(((((.-----..................(((((((.....))))))).(((((......)))))......)))))..))))))))............---....... ( -24.00)
>DroSim_CAF1 1675 110 - 1
GUAUUAGUUUCCAUCC-----UUCCUCCUGUAGUCAUAAUAUCCUAUGAUUUAGGAUACAUGUAUUCGUUUAUAUAAAAUCGAUGGUUAUUGAUACACUUUUGCUGAC---CGACUAC
((((((((..(((((.-----....(((((.(((((((......))))))))))))...(((((......)))))......)))))..))))))))............---....... ( -27.20)
>DroEre_CAF1 2234 116 - 1
GUAUUAGUUUCCAUGUAUUAGUUUCUCCUGUAGACAUGAUAACCUACAUUAUAGGAUACAGGCAUUCGUUUAUUUACAAUCGAUGGACACUAAUACACUUUUGCUGGCAACGGACC--
((((((((.(((((............((((((..((((((.......))))).)..)))))).....((......)).....))))).)))))))).......(((....)))...-- ( -29.50)
>DroYak_CAF1 1851 113 - 1
GUAUUAGUUUCCAUGC-----UCUCUUCUGUAGGCAUGAUAUCCUACAUUAUUGGAUACAGAUAUUAGUUUAUUUAAAAUCGAUGGUAACUGAUGCACUUGUGCUGGCAAACGACUCC
(((((((((.((((((-----(..(....)..))).((.(((((.........)))))))(((.((((.....)))).))).)))).)))))))))..((((........)))).... ( -25.30)
>consensus
GUAUUAGUUUCCAUCC_____UCCCUCCUGUAGUCAUAAUAUCCUAUAUUAUAGGAUACAUGUAUUCGUUUAUAUAAAAUCGAUGGUAAUUGAUACACUUUUGCUGGC___CGACUAA
((((((((..(((((........................(((((((.....))))))).(((((......)))))......)))))..))))))))...................... (-19.78 = -19.50 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:26 2006