| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 917,178 – 917,272 |
| Length | 94 |
| Max. P | 0.975333 |
| Location | 917,178 – 917,272 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 83.17 |
| Mean single sequence MFE | -20.28 |
| Consensus MFE | -14.19 |
| Energy contribution | -14.97 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.07 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.975333 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 917178 94 + 1281640 UAAUGCGGGAAAAAACAUUUAUAUUUCC-CAUUCAAGUAUUU-GUUGCCCGCAUUU-------AAAACAAUUUUACCCUCUAAAACAAAC-GUAGUUGAUUACG .((((((((....((((...((((((..-.....)))))).)-))).)))))))).-------..........................(-((((....))))) ( -18.20) >DroSec_CAF1 27335 95 + 1 AAAUGCGGGCAAAAACAUUUAUAUUUCC-CAUUCAAGUAUUU-GUUGCCCGCAUUU-------AAAACAAUUUUACCCCUUAAAACAAACCAUAGCUGAUUACG (((((((((((...(((...((((((..-.....)))))).)-)))))))))))))-------......................................... ( -20.00) >DroEre_CAF1 31660 104 + 1 CAAUGCGGGCAAAAACAUUUACGUUUCCACCUUCAACUAUUCGGUUGCCCGCAUUUAAGUAUUAAAACAAGAUUAGCCCUCAAAACAAACCAUAGCUGAUUACG .((((((((((.((((......))))..(((...........)))))))))))))...............(((((((.................)))))))... ( -22.63) >consensus AAAUGCGGGCAAAAACAUUUAUAUUUCC_CAUUCAAGUAUUU_GUUGCCCGCAUUU_______AAAACAAUUUUACCCCUUAAAACAAACCAUAGCUGAUUACG .(((((((((((........((((((........))))))....)))))))))))................................................. (-14.19 = -14.97 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:24 2006