Locus 137

Sequence ID 4_DroMel_CAF1
Location 913,709 – 913,824
Length 115
Max. P 0.522120
window218

overview

Window 8

Location 913,709 – 913,824
Length 115
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 89.97
Mean single sequence MFE -26.88
Consensus MFE -23.09
Energy contribution -22.97
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -1.34
Structure conservation index 0.86
SVM decision value -0.02
SVM RNA-class probability 0.522120
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 913709 115 - 1281640
UCCGCGCAA-AGCUUACUUGCUGGUAGCUUCAUGAAAACGGAGCUAGGCGCAACAAAGAAUUUACUAAAUUGUACUGUGAAUUUCAACGUUUU-UUUAAUUCUUAGCAGAGCACAAA
...((((..-(((......)))..(((((((.(....).))))))).))))...................(((.(((((((((..........-...)))))...)))).))).... ( -25.32)
>DroSec_CAF1 25634 116 - 1
UCCGCGCAA-AGCUUACUUGCUGGUAGCUUCAUGAAAACGGAGCUAGGCGCAACAAAGAAUUUAAUAAAUUGUAGUGUGCAUUUCAACGUUUUUUUUACUUCUCAGCAGAGCACAAA
.........-.((((...(((((((((((((.(....).))))))).(((((((((.............))))..)))))......................))))))))))..... ( -25.72)
>DroEre_CAF1 29299 114 - 1
UCCGCACAAAAGCUUAU-UGCUGAUAGCUUCAUUAAAACGGAGCUAGGCGCAACAAAGAAUUUACUAAAUUGUUGUGUGCAUUUCAACGCUUU--UUAAUUCUCAGCAGAGCACAUU
...........((((..-(((((((((((((........))))))).(((((((((((......))...)))))))))((........))...--.......))))))))))..... ( -29.70)
>DroYak_CAF1 26096 116 - 1
UCCGCACAAAAGCUUAUUUGCUGGUAGCUUCAUAAAAACGGAGCUAGGCGCAACAAAGAAUUUACCAAGUUGUAGUGUGGAUUUCAACGUUUU-UUUUAUUCUCAGCAGAGCGCAAA
(((((((............(((..(((((((........))))))))))(((((..............))))).)))))))......((((((-.............)))))).... ( -26.76)
>consensus
UCCGCACAA_AGCUUACUUGCUGGUAGCUUCAUGAAAACGGAGCUAGGCGCAACAAAGAAUUUACUAAAUUGUAGUGUGCAUUUCAACGUUUU_UUUAAUUCUCAGCAGAGCACAAA
...........((((...(((((((((((((........))))))).((((.((((.............)))).))))........................))))))))))..... (-23.09 = -22.97 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:22 2006