Locus 136

Sequence ID 4_DroMel_CAF1
Location 912,817 – 912,932
Length 115
Max. P 0.559611
window217

overview

Window 7

Location 912,817 – 912,932
Length 115
Sequences 4
Columns 115
Reading direction reverse
Mean pairwise identity 91.16
Mean single sequence MFE -27.50
Consensus MFE -20.23
Energy contribution -20.35
Covariance contribution 0.12
Combinations/Pair 1.11
Mean z-score -1.77
Structure conservation index 0.74
SVM decision value 0.05
SVM RNA-class probability 0.559611
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 912817 115 - 1281640
CUCAAAAGCCAGAUUAAAAUAAAGGAGCAGUUACGACUUCAGCAACAAUCAACGAUUUAUGCGUCGUCACUAUUGAGCUCUUCUGCUGCCGGAUCAGUAAGAGCUCCGCUCUUAA
......................(((((((((.(((((....(((..((((...))))..)))))))).)))...(((((((..(((((......)))))))))))).)))))).. ( -32.30)
>DroSec_CAF1 24759 115 - 1
CUCAAAAGCCAGAUUAAAAUAAAGGAGCAGUUACGACUUCAGCAACAAUCAACGAUUUAUGCGUCGUCACUAUUGAGCUCUUCUGCUGCCGGAUCAGUAAAAGCUCCGCUCUCAA
.......................((((((((.(((((....(((..((((...))))..)))))))).)))...(((((....(((((......)))))..))))).)))))... ( -26.00)
>DroEre_CAF1 28367 115 - 1
CUCAAAAGCCAGAUUGAAAUAAAGGAGCAGUUACGACUUCAGCAACAAUCAACAAUGUAUGCGUCGUCACUAUUAAGUACUUCUGCUGGUGGAUCAGUAAGAGAACCGCUCUUAA
.((((........)))).....(((((((((.(((((....((((((........))).)))))))).))).....((.((..((((((....))))))..)).)).)))))).. ( -27.60)
>DroYak_CAF1 25264 115 - 1
CUAAAAAGCCAGAUUAAAAUAAAGGAGCAGUUACGGCUUCAGCAACAAUCAACGAUGUAUGCGUCGUCACUAUUUAACUCUUCUUCUGGUAGAUUAGUAAAAGCACCGCUCUUAA
((((...((((((.........(((((.(((((..((....))........((((((....)))))).......))))))))))))))))...))))(((.(((...))).))). ( -24.10)
>consensus
CUCAAAAGCCAGAUUAAAAUAAAGGAGCAGUUACGACUUCAGCAACAAUCAACGAUGUAUGCGUCGUCACUAUUGAGCUCUUCUGCUGCCGGAUCAGUAAAAGCACCGCUCUUAA
......................(((((((((.(((((....(((...(((...)))...)))))))).)))........(((.(((((......))))).)))....)))))).. (-20.23 = -20.35 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:20 2006