Locus 135

Sequence ID 4_DroMel_CAF1
Location 912,119 – 912,239
Length 120
Max. P 0.745282
window216

overview

Window 6

Location 912,119 – 912,239
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.28
Mean single sequence MFE -28.90
Consensus MFE -21.23
Energy contribution -23.73
Covariance contribution 2.50
Combinations/Pair 1.11
Mean z-score -1.77
Structure conservation index 0.73
SVM decision value 0.46
SVM RNA-class probability 0.745282
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 912119 120 + 1281640
UAUCCCAAUGUCUAAGUUUUUGCCAUUGAAAUCAAUGUUUUCAAAAUUUGGAUGGGAAUCUAUUGCGUAAGCGGAAUUCAUAAGGUCUUCCGAUUUAGUAGCUUGCGUAUGUUUUGUUAC
..(((((...((((((((((...(((((....))))).....)))))))))))))))......(((((((((.(((((.....((....)))))))....)))))))))........... ( -30.90)
>DroSec_CAF1 24061 120 + 1
UAUCCCAAUGUCUAAGCUUUUGCCAUUGAAUUCAAUGUUUUCAAAAUUUGGAUGGGAAUCUAUUGCGCAAGCGGAAUUCAUAAACUCUUCGGAUUCAGUAGCUUGCGUAUGUUUUGUUAU
..(((((...((((((.(((((.(((((....)))))....))))))))))))))))......(((((((((.((((((...........))))))....)))))))))........... ( -35.40)
>DroEre_CAF1 27672 120 + 1
UAUCCCAAUUUCUAAGCUUUUGUCAUUCAAUGUAACGUUUUCAAAAUUUGGAUUGGAAUCUAUUGCGCAAGCAGAAUUGAUAAACUCAUCAGAUUCAGUACCAUGCGUAAGUUCUGUUAC
.((((.(((((..((((.((...(((...))).)).))))...))))).))))..((((((.((((....))))....(((......))))))))).(((.((.((....))..)).))) ( -20.60)
>DroYak_CAF1 24566 120 + 1
UAUUCCAAGUUCCAAGCUAUUGUCAUUCAAUGCAACGUUUUCAAAAUUUGGAUGGGAAUCUAUUGCGCAAGCGGCAUUCAUAAACUCAUUGGAUUCAGUAGCUGGCGUUAGUUCGCUUAC
..............((((((((..((((((((....((((........(((((....)))))((((....)))).......)))).)))))))).))))))))((((......))))... ( -28.70)
>consensus
UAUCCCAAUGUCUAAGCUUUUGCCAUUCAAUGCAACGUUUUCAAAAUUUGGAUGGGAAUCUAUUGCGCAAGCGGAAUUCAUAAACUCAUCGGAUUCAGUAGCUUGCGUAAGUUCUGUUAC
..(((((...((((((.(((((.(((((....)))))....))))))))))))))))......(((((((((.((((((...........))))))....)))))))))........... (-21.23 = -23.73 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:18 2006