Locus 133

Sequence ID 4_DroMel_CAF1
Location 899,786 – 899,888
Length 102
Max. P 0.940151
window213

overview

Window 3

Location 899,786 – 899,888
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 94.37
Mean single sequence MFE -23.90
Consensus MFE -20.51
Energy contribution -20.07
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -3.28
Structure conservation index 0.86
SVM decision value 1.28
SVM RNA-class probability 0.940151
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 899786 102 + 1281640
UGUACAUAGGUAUGUAAGUGUUUAAGCUAUGUACGUUGUAUCGGCAAUAUGCAUGGUUAUCGAACAAAAAACACUCAGUUCUGUAUAAAUACAAAAAAGGAA
..(((((....))))).((((((((((((((((..((((....))))..)))))))))...((((............))))....))))))).......... ( -23.30)
>DroSec_CAF1 8230 98 + 1
UGUACAUAGG----UAAGUGUUUAAGCUAUGUACGUUGUAUCGACAAUAUGCAUGGUUAUCAAACAAAAAACACUCAGUUCUGUACAAAUACAAAAAACGAA
((((((.((.----(.(((((((.(((((((((..((((....))))..)))))))))..........))))))).).)).))))))............... ( -24.20)
>DroSim_CAF1 10336 98 + 1
UGUACAUAGG----UAAGUGUUUAAGCUAUGUACGUUGUAUCGACAAUAUGCAUGGUUAUCAAACAAAAAACACUCAGUUCUGUACAAAUACAAAAAAUGAA
((((((.((.----(.(((((((.(((((((((..((((....))))..)))))))))..........))))))).).)).))))))............... ( -24.20)
>consensus
UGUACAUAGG____UAAGUGUUUAAGCUAUGUACGUUGUAUCGACAAUAUGCAUGGUUAUCAAACAAAAAACACUCAGUUCUGUACAAAUACAAAAAACGAA
((((((..((......(((((((.(((((((((..((((....))))..)))))))))..........)))))))....))))))))............... (-20.51 = -20.07 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:12 2006