| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 896,931 – 897,044 |
| Length | 113 |
| Max. P | 0.535409 |
| Location | 896,931 – 897,044 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 79.65 |
| Mean single sequence MFE | -29.87 |
| Consensus MFE | -16.64 |
| Energy contribution | -15.48 |
| Covariance contribution | -1.16 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 896931 113 - 1281640 U--AAAGGUCAAGUUGCCAACUCAAAAAGGGGACGAUGCUUGGAAGUUGUAUUUUGAUGAAAUACCCGAAGAGAUUGUCGACGAGUUUUCGAUGCGUUAUGGAAUUGAGAAUAUU .--...(((......)))..(((((...(....)(((((.........(((((((...))))))).((((((..(((....))).))))))..)))))......)))))...... ( -21.70) >DroGri_CAF1 44943 112 - 1 ---ACAGGUCAAGCUGCCCACGCAAAAAGGUGACGAUGCGUGGAAGCUGUACUUUGACGAGAUUCCCGAGGAAAUUGUCGACGAGUUCUCGAUGCGAUAUGGCAUCGAGAAUAUA ---....(((.((((..(((((((....(....)..))))))).)))).......(((((..((((...)))).))))))))..(((((((((((......)))))))))))... ( -47.80) >DroWil_CAF1 10679 113 - 1 C--GAAGGUUAAACUUCCAACACAAAAAGGCGACGAUGCCUGGAAACUGUAUUUCGAUGAAAUCCCUGAAGAAAUUGUAGACGAGUUCUCUAUGAGAUACGGCAUAGAGAAUAUA .--((((......))))....((((..((((......))))(....)....(((((..(....)..)))))...))))......((((((((((........))))))))))... ( -23.30) >DroMoj_CAF1 33241 113 - 1 U--AUAGGUAAAGCUACCCACCCAAAAAGGCGAUGAUGCAUGGAAGCUCUAUUUUGAUGAAAUUCCCGAAGAAAUUGUUGACGAGUUUUCAAUGCGUUAUGGUAUCGAAAAUAUA .--...((((....))))...........((.(((((((((((((((((....(..(..(..(((.....))).)..)..).)))))))).))))))))).))............ ( -25.40) >DroAna_CAF1 239088 115 - 1 UUAUAAGGUUAAAUUGCCAAUCCAAAAAGGCGAUGACGCUUGGAAACUUUAUUUCGAUGAAAUUCCUGAGGAGAUUGUUGAUGAGUUUUCAAUGCGGUAUGGAAUUGAAAACAUU .......(((..((((((..........))))))..(((((((((((((....((((..(..((((...)))).)..)))).)))))))))).))).............)))... ( -26.80) >DroPer_CAF1 9900 113 - 1 U--GUAGGUUAAAUUGCCAACGCAAAAGGGUGACGAUGCAUGGAAACUCUAUUUCGAUGAGAUCCCCGAGGAAAUUGUCGAUGAGUUUUCAAUGCGCUACGGUAUCGAAAAUAUC .--...(((......)))..(((......))).((((((((((((((((....((((..(..(((....)))..)..)))).)))))))).))))((....))))))........ ( -34.20) >consensus U__AAAGGUUAAACUGCCAACCCAAAAAGGCGACGAUGCAUGGAAACUGUAUUUCGAUGAAAUUCCCGAAGAAAUUGUCGACGAGUUUUCAAUGCGAUAUGGAAUCGAAAAUAUA ......(((......)))............(((((((....(....)....(((((..........)))))..)))))))....(((((((((((......)))))))))))... (-16.64 = -15.48 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:11 2006