Locus 13

Sequence ID 4_DroMel_CAF1
Location 160,590 – 160,710
Length 120
Max. P 0.751768
window23

overview

Window 3

Location 160,590 – 160,710
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.61
Mean single sequence MFE -32.59
Consensus MFE -15.63
Energy contribution -16.66
Covariance contribution 1.03
Combinations/Pair 1.28
Mean z-score -2.26
Structure conservation index 0.48
SVM decision value 0.48
SVM RNA-class probability 0.751768
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 160590 120 + 1281640
AAUUCCCUUAAAAAGUGUUGAUCGAUUGCCAUUCGAUCACUUCCUUUUCGGUAUGGUAACGUGUCAUUCUAUAACAAUAUUGAACGGCAGAAUGAUGGGCGACCCAUUGGAUUUAAAAAU
...(((.(..(((((.(.(((((((.......)))))))...))))))..)...(((..(.(((((((((..................))))))))).)..)))....)))......... ( -24.27)
>DroVir_CAF1 9658 120 + 1
AAUACCACUGAAAGAUGUGAAGCGUCUGCCAUACGAUCACUUUCUGUUUGGCAUGGUCACAUGCCACUCAAUUACCGUCAUGAACGGCAUGAUGAUGGGUGAUCCCUUGGAUCUUAAGAU
............(((((.....))))).(((...((((((((..((..(((((((....)))))))..)).....(((((((.....)))))))..))))))))...))).......... ( -37.30)
>DroPse_CAF1 5726 120 + 1
AAUACCCUUGAAGAACGUGAAUCGUCUGCCAUAUGAUCACUUUCUUUUUGGCAUGGCAACAUGUCAUUCUAUUACUGUACUGAAUGGUACGAUGAUGGGUGACCCACUGGAUCUUAAAAU
..(((((..((((((.((((.((((.......)))))))).)))))).(((((((....)))))))....((((.((((((....)))))).))))))))).((....)).......... ( -33.70)
>DroMoj_CAF1 15164 120 + 1
AAUACCCCUUAAAGAUGUUAAGCGAUUACCAUACGAUCAUUUUCUGUUUGGGAUGGUCACGUGCCAUUCAAUUACUUUUAUGAAUGGUACAAUGAUGGGUGAUCCCUUAGAUCUUAAGAU
.......(((((.(((.(((((.(((((((....(((((((((......)))))))))..((((((((((..........)))))))))).......))))))).))))))))))))).. ( -39.50)
>DroAna_CAF1 38525 120 + 1
AAUACCAUUGAGAGAUGUCCUUCGUCUUCCGUAUGAUCAUUUUCUUUUUGGUAUGGUAACAUGUCAUUCAAUAACCAUUCUUAAUGGCAUAAUGAUGGGUGAUCCGCUGGACCUCAAAAU
.......((((((((((.....)))))((((...((((((........((..(((....)))..))........(((((.(((......))).)))))))))))...)))).)))))... ( -27.10)
>DroPer_CAF1 7603 120 + 1
AAUACCCUUGAAGAACGUGAAUCGUCUGCCAUAUGAUCACUUUCUUUUUGGCAUGGCAACAUGUCAUUCUAUUACUGUACUGAAUGGUACGAUGAUGGGUGACCCACUGGAUCUUAAAAU
..(((((..((((((.((((.((((.......)))))))).)))))).(((((((....)))))))....((((.((((((....)))))).))))))))).((....)).......... ( -33.70)
>consensus
AAUACCCUUGAAAAAUGUGAAUCGUCUGCCAUACGAUCACUUUCUUUUUGGCAUGGUAACAUGUCAUUCAAUUACUGUACUGAAUGGCACAAUGAUGGGUGACCCACUGGAUCUUAAAAU
..(((((.............((((((((((((..((......)).....((((((....))))))..................)))))).)))))))))))................... (-15.63 = -16.66 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:12 2006