Locus 129

Sequence ID 4_DroMel_CAF1
Location 871,932 – 872,047
Length 115
Max. P 0.861207
window209

overview

Window 9

Location 871,932 – 872,047
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.39
Mean single sequence MFE -33.29
Consensus MFE -16.54
Energy contribution -17.06
Covariance contribution 0.52
Combinations/Pair 1.29
Mean z-score -1.95
Structure conservation index 0.50
SVM decision value 0.83
SVM RNA-class probability 0.861207
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 871932 115 - 1281640
GAGGGGAGUUAGGGACUUGGGACCCUAAAUUAUCCGUGAGUAUGCCAAUGCACGAGUCAUAU----ACAUCAAUGUAAUGGGGGAUGCUCAUAUUGCCCACCAAGUUUC-AUGGCUUCCA
...(((((((((..((((((..(((((........((((.(.(((....)))..).)))).(----(((....)))).)))))...((.......))...))))))..)-.)))))))). ( -36.60)
>DroSec_CAF1 47478 119 - 1
AAGGGCAGUUAGGGACUUGGGAGCCUAAAUUAUCCGUGAGUAUGGCGAUGCAU-ACUCAUAUAUGUACAUCAAUGUAAUGGGGGAUGCUCAUAUCGCCCACCAAGUUUCAAUGGCUUCCA
..(((.((((((..((((((...............(((((((((......)))-)))))).....((((....)))).((((.((((....)))).))))))))))..)..)))))))). ( -39.60)
>DroSim_CAF1 42701 119 - 1
AAGGGCAGUUAGGGAUUUGGGAGCCUAAAUUAUCCGUGAGUAUGCCGAUGCAU-ACUCAUAUAUGUACAUCAAUGUAAUGGGGGAUGCUCAUAUCGCCCACCAAGUUUCAAUGGCUUCCA
..(((.((((((..((((((...............((((((((((....))))-)))))).....((((....)))).((((.((((....)))).))))))))))..)..)))))))). ( -39.90)
>DroEre_CAF1 47619 106 - 1
AAAGGGAGUUUGAGAUAUGGGUCCUUAAAUCAUCCGUCAGUACGCCA----------CAU---UUUUCAUAAAAGAAAAUGGGGGUGCUC-UAUUGCCCAGCGAGUUUCAAUGGCUUCUA
...(((((((((((((.(((((................(((((.((.----------(((---((((.......))))))))).))))).-....)))))....)))))))..)))))). ( -28.60)
>DroYak_CAF1 53010 96 - 1
AAA----GUUAGAAAUUUGGGUCCCUAAAACCUCUGUCAGUAUA-------------------UGUACAUAAAUGUAAAUGGGGGUGCUC-UAUUGCCCAGCGAUUUUCAAUGGCUUCUA
.((----((((((((.((((((.......((((((((...((((-------------------(........))))).))))))))....-....))))))....))))..))))))... ( -21.76)
>consensus
AAGGGCAGUUAGGGAUUUGGGACCCUAAAUUAUCCGUGAGUAUGCCAAUGCA__A_UCAUAU_UGUACAUCAAUGUAAUGGGGGAUGCUCAUAUUGCCCACCAAGUUUCAAUGGCUUCCA
..(((.((((((((((((((.............................................(((......))).((((.((((....)))).)))))))))))))..)))))))). (-16.54 = -17.06 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:07 2006