Locus 128

Sequence ID 4_DroMel_CAF1
Location 871,732 – 871,852
Length 120
Max. P 0.840512
window208

overview

Window 8

Location 871,732 – 871,852
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.36
Mean single sequence MFE -35.98
Consensus MFE -30.58
Energy contribution -32.14
Covariance contribution 1.56
Combinations/Pair 1.13
Mean z-score -1.55
Structure conservation index 0.85
SVM decision value 0.75
SVM RNA-class probability 0.840512
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 871732 120 + 1281640
UGGGUCAGGGCGACUUUAAAUGUGGACAAGUGAUGUAGGCAGUGGGUGGUGGCUGCUGACUGAUGGCUGGUGACUACCAAAACAAUUAUUCUUAUCUAGGGUAUUUGGCUGCCAUUGGAG
((.((((..((.((.......)).).)...)))).))((((((.((((((.((((((.......))).))).))))))....(((.((((((.....)))))).)))))))))....... ( -36.90)
>DroSec_CAF1 47278 120 + 1
UGGGCCAGGGCGACUUUAAAUGUGGACAAGUGAAGUAGGCAGUGGGUGGUGGCUGCUGACUGAUGGCUGGUGACUACCAAAACAAUUAUUCUUAUCUAGGGUAUUUGGCUGCCAUUGGAG
....((((....((((((..((....))..)))))).((((((.((((((.((((((.......))).))).))))))....(((.((((((.....)))))).))))))))).)))).. ( -40.60)
>DroSim_CAF1 42501 120 + 1
UGGGCCAGGGGGACUUUAAAUGUGGACAAGUGAAGUAGGCAGUGGGUGGUGGCUGUUGACUGAUGGCUGGUGACUACCAAAACAAUUAUUCUUAUCUAGGGUAUUUGGCUGCCAUUGGAG
....((((....((((((..((....))..)))))).((((((.(((((((((((((....)))))))....))))))....(((.((((((.....)))))).))))))))).)))).. ( -38.20)
>DroEre_CAF1 47430 109 + 1
UGGGCCAAGGCGACUUUAGAUGUGGACAAGUGAAGUAGGCAGUGGGUGGUGGCUGAU-------GGCUGGUGACUACCAAAACAAUUAUUUUUAUCUG----CUUUGGCUGCCAUUGGAG
..((((((((((((((((..((....))..)))))).....((.((((((.(((...-------....))).))))))...)).............))----)))))))).......... ( -33.60)
>DroYak_CAF1 52830 112 + 1
UGGGCCAGGGCGACUUUAAAUGUGGACAAGUGAAGUAGGCAGUGGGUGGUGGCUGCU-------GUCUGG-GACUACCAAAACAAUUAUUUUUAUCUAGGGUAUUUGGCUGCCAAUAGAG
...((....)).((((((..((....))..)))))).((((((.(((((((((....-------)))...-.))))))....(((.((((((.....)))))).)))))))))....... ( -30.60)
>consensus
UGGGCCAGGGCGACUUUAAAUGUGGACAAGUGAAGUAGGCAGUGGGUGGUGGCUGCUGACUGAUGGCUGGUGACUACCAAAACAAUUAUUCUUAUCUAGGGUAUUUGGCUGCCAUUGGAG
....((((....((((((..((....))..)))))).((((((.((((((.((((((.......))).))).))))))....(((.((((((.....)))))).))))))))).)))).. (-30.58 = -32.14 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:05 2006