Locus 127

Sequence ID 4_DroMel_CAF1
Location 864,923 – 865,039
Length 116
Max. P 0.543406
window207

overview

Window 7

Location 864,923 – 865,039
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.98
Mean single sequence MFE -29.10
Consensus MFE -21.71
Energy contribution -23.52
Covariance contribution 1.81
Combinations/Pair 1.03
Mean z-score -1.48
Structure conservation index 0.75
SVM decision value 0.02
SVM RNA-class probability 0.543406
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 864923 116 + 1281640
GUGGCCUGUCCUCUUCAGGCCAUUGAUGGUAUUAGCGCUGUCUCUGUUGGGCCUCUUAAAAGUUAAAAGGGG-CUCGACCAAUUACACCUACACCCAUCUUGUUUUAGCACUUGA---UC
((((((((.......)))))))).(((((...(((.(.(((....((((((((((((.........))))))-)))))).....)))))))...)))))................---.. ( -38.20)
>DroSec_CAF1 41780 115 + 1
UUGGCCUGUCCUCUUCAGGCCAUUCAUGAUGUUAGCGCUGUCUCUGUUGGGCCUCUUAAAAGAUAAAAGGGGCCUCGACCAAUUACACCUACACCCAUCUUGUUUUAGCACUCGC-----
.(((((((.......)))))))..((.((((.(((.(.(((....((((((((((((.........)))))))).)))).....)))))))....)))).)).............----- ( -32.60)
>DroEre_CAF1 42560 120 + 1
GUGGCCUGUCCUCUUCAGGCCAUUCAUGGUAUUAGCGCUGUCUCUCUUGGUCCUCUUAAAAGUUAAAAUGGGCCUCGACCAAUUACACCUACACCCAUCUUGUUCUAGCACUCGCAUUUC
((((((((.......))))))))..((((...(((.(.(((...((..(((((................)))))..))......)))))))...)))).........((....))..... ( -25.59)
>DroYak_CAF1 48615 119 + 1
-UGGCCUGUCCUCUUUACGCCAUUCAUGGUAUUAGCGCUGUCUCUGUUGGGCCUCAUAAAAGUAAAAAGCGGCCUCGACCAAUUACACCUACACCCAUCUUAUUUUAGCAUUCGCAUUUU
-((((.((.......)).))))...((((...(((.(.(((....((((((((.(.............).)))).)))).....)))))))...)))).........((....))..... ( -20.02)
>consensus
GUGGCCUGUCCUCUUCAGGCCAUUCAUGGUAUUAGCGCUGUCUCUGUUGGGCCUCUUAAAAGUUAAAAGGGGCCUCGACCAAUUACACCUACACCCAUCUUGUUUUAGCACUCGC___UC
.(((((((.......)))))))...((((...(((.(.(((....((((((((((((.........)))))))).)))).....)))))))...))))...................... (-21.71 = -23.52 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:04 2006