Locus 124

Sequence ID 4_DroMel_CAF1
Location 854,317 – 854,437
Length 120
Max. P 0.890303
window200

overview

Window 0

Location 854,317 – 854,437
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 73.75
Mean single sequence MFE -28.62
Consensus MFE -16.31
Energy contribution -17.25
Covariance contribution 0.94
Combinations/Pair 1.07
Mean z-score -1.97
Structure conservation index 0.57
SVM decision value 0.96
SVM RNA-class probability 0.890303
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 854317 120 - 1281640
CACCACUAUAGGACCCAACACACUUUGCAUGUGAAUGCGGUGCACGUGCAUCUGCAUCUGCCGUGUACUCUGUGUUGUGCAUUUGUGUUAAGUGUUAGCUACAAAUCAUUUCACUACAAA
........(((((..(((((((....((((....))))((((((((.(((........))))))))))).)))))))((.((((((((((.....)))).))))))))..)).))).... ( -33.00)
>DroSec_CAF1 34405 114 - 1
CACCAUUAUAGGACCCAACACAUUUUGCAUGUGAAUGCGGUGCACGUGCAU------CUGCCUUGUACUCUGUGUUGUGCAUUUGUGUUAAGUGUUAGCUACAAAUCAUUUCCCUACAAA
........((((...(((((((....((((....))))((((((.(.((..------..))).)))))).)))))))((.((((((((((.....)))).))))))))....)))).... ( -29.40)
>DroEre_CAF1 34864 90 - 1
--------------GCAACAC-UUUUGCAUGUGAAUGCCAUGCACGUGCAU------CUGGCUUGUACACUGUGUUGUGCAUUUGUGUUUAGUGCUAGCUACAAAUA---------CAAA
--------------(((((((-...((((((.(....))))))).(((((.------......)))))...)))))))...((((((((((((....))))..))))---------)))) ( -26.50)
>DroYak_CAF1 36812 90 - 1
--------------GCAACUC-UUUUGCAUGUGAAUGCAGUGGACGUGCAC------CUGGCUUGUACACUCUGUUGUGCAUUUGUGUUUAGUGCCAGCUACAAAUA---------AUAC
--------------(((..((-(.((((((....)))))).)))..)))..------((((((((.((((..((.....))...)))).))).))))).........---------.... ( -25.60)
>consensus
______________CCAACAC_UUUUGCAUGUGAAUGCGGUGCACGUGCAU______CUGCCUUGUACACUGUGUUGUGCAUUUGUGUUAAGUGCUAGCUACAAAUA_________CAAA
...............((((((...((((((....)))))).....(((((.............)))))...))))))...((((((((((.....)))).)))))).............. (-16.31 = -17.25 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:53 2006