| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 852,348 – 852,444 |
| Length | 96 |
| Max. P | 0.864708 |
| Location | 852,348 – 852,444 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 80.12 |
| Mean single sequence MFE | -26.30 |
| Consensus MFE | -18.28 |
| Energy contribution | -19.68 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.864708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 852348 96 + 1281640 CGGUCCCGAAAGCAAACUAU-UUUCUUGCUUAGUUCG--UUGUUGCUAAUUU-UUCUGUGGGCCAGUUUUGCCAGAUCUCUCAGGCAGAACUGGAUAAAC .((((((((((((((.....-....))))(((((...--.....)))))..)-))).).)))))(((((((((.((....)).)))))))))........ ( -27.30) >DroSec_CAF1 32460 96 + 1 CGGUCCCGAAAGAAAACUAU-UUUCUUGUUUAGUUCG--UUGUUGCUAAUUU-UUCUGUGGGCCAGUUUUGCCAGAUCUCUCAGGCAGAACUGGAUAAAC ....((((.((((((.....-))))))..(((((...--.....)))))...-.....))))(((((((((((.((....)).)))))))))))...... ( -27.70) >DroEre_CAF1 32768 97 + 1 UGGUCCCGAAAGCAAGCUUU-UUUCUUGUUUAGUUCG--CUGUUGCUAAUUUUUUCUGUGGGCCAGUUUUGCCAGAUCUCUCAGGCAGAACUGGAUAAAC ....((((.(((((((....-...)))))))((((.(--(....)).)))).......))))(((((((((((.((....)).)))))))))))...... ( -28.60) >DroWil_CAF1 42987 90 + 1 -------AAAAGCGAUUUAU-UUUGUUGUUUUGUUUGGCUCGCUGCCUGCUU-UCCGCUUGUCCAGUUUUACCAGCUUGGCUUGCAAGAACUGGAUAAA- -------.((((((((....-...))))))))((..(((.....))).))..-.....((((((((((((.(.(((...))).)..)))))))))))).- ( -23.60) >DroYak_CAF1 34713 97 + 1 CGGUCCCAAACGCCAGCUUUUUUUCUUGUUUAGUUCG--UUGUUGCUAAUUU-UUCUGUGGGCCAGUUUUGCCAGAUCUCUCAGGCAGAACUGGAUAAAC ....((((...(....)............(((((...--.....)))))...-.....))))(((((((((((.((....)).)))))))))))...... ( -24.30) >consensus CGGUCCCGAAAGCAAACUAU_UUUCUUGUUUAGUUCG__UUGUUGCUAAUUU_UUCUGUGGGCCAGUUUUGCCAGAUCUCUCAGGCAGAACUGGAUAAAC ....((((...(((((........)))))(((((..........))))).........))))(((((((((((.((....)).)))))))))))...... (-18.28 = -19.68 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:51 2006