Locus 12

Sequence ID 4_DroMel_CAF1
Location 156,607 – 156,727
Length 120
Max. P 0.671752
window22

overview

Window 2

Location 156,607 – 156,727
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.00
Mean single sequence MFE -27.44
Consensus MFE -25.58
Energy contribution -24.50
Covariance contribution -1.08
Combinations/Pair 1.21
Mean z-score -1.14
Structure conservation index 0.93
SVM decision value 0.29
SVM RNA-class probability 0.671752
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 156607 120 + 1281640
CGAAUAAAAAACGGGUACGAAAAGAAAAGUGUGAGUGCUCUAGCGAACGAACAAUAUCAAGUUUGCGCCUUGGAUUCUUAUCAUUUGUCUUUUAUCUAUUGAUGUUGCCUUUUCGAUUAG
((((.....((((.(((..((((((.(((((((((...(((((((..(((((........))))))))..))))..)))).))))).))))))...)))...)))).....))))..... ( -24.20)
>DroSec_CAF1 31064 120 + 1
CGAAUAAAAAACGGGUACGAAAAGAAAAGUGUGAGUGCUCUAGCGAACAAACAAUAUCAAGUUUGCGCUUUGGAUUCUUAUCACUUGUCUUUUAUCUAUUGAUGUUGCCUUUUCGAUUAG
((((.....((((.(((..((((((.(((((((((..((..((((..(((((........)))))))))..))...)))).))))).))))))...)))...)))).....))))..... ( -29.00)
>DroSim_CAF1 16197 120 + 1
CGAAUAAAAAACGGGUACGAAAAGAAAAGUGUGAGUGCUCUAGCGAACAAACAAUAUCAAGUUUGCGCUUUGGAUUCUUAUCACUUGUCUUUUAUCUAUUGAUGUUGCCUUUUCGAUUAG
((((.....((((.(((..((((((.(((((((((..((..((((..(((((........)))))))))..))...)))).))))).))))))...)))...)))).....))))..... ( -29.00)
>DroEre_CAF1 18565 120 + 1
CGAAUAAAAAACGUAUACGAGAAGAAAAGUGUGAGUGCUUAAGCGAACAAACCAUAUCAAGUUCGCGCUUUGGAUUCUUAUCACUUCUCUUUUAUCUAUUGAUGUUGCCUUUUCGAUUAG
((((.....(((((.....((((((.(((((.((((.(....((((((............)))))).....).))))....))))).))))))........))))).....))))..... ( -28.52)
>DroYak_CAF1 18821 120 + 1
CGAAUAAAAAACGUGUACGAGAGAAAAAGUGUGAGUGCUUAAGUGAGCAAACAAUAUCAAGUUCGCGCUUUGGAUUCUUAUCACUUCUCUUUUAUCUAUUGAUGUUGCCUUUUCGAUUAG
((((.....((((((((.((((((((((((((((((((((....)))))............)))))))))).(((....)))..))))))).)))......))))).....))))..... ( -26.50)
>consensus
CGAAUAAAAAACGGGUACGAAAAGAAAAGUGUGAGUGCUCUAGCGAACAAACAAUAUCAAGUUUGCGCUUUGGAUUCUUAUCACUUGUCUUUUAUCUAUUGAUGUUGCCUUUUCGAUUAG
((((.....((((.(((..((((((.(((((.((((.(....((((((............)))))).....).))))....))))).))))))...)))...)))).....))))..... (-25.58 = -24.50 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:10 2006