Locus 119

Sequence ID 4_DroMel_CAF1
Location 830,213 – 830,332
Length 119
Max. P 0.607239
window183

overview

Window 3

Location 830,213 – 830,332
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.20
Mean single sequence MFE -40.86
Consensus MFE -37.04
Energy contribution -36.52
Covariance contribution -0.52
Combinations/Pair 1.14
Mean z-score -1.20
Structure conservation index 0.91
SVM decision value 0.15
SVM RNA-class probability 0.607239
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 830213 119 + 1281640
AUCCACUUCCUCAUUCACCCACGGAACUGUUCCGAUGA-GCUGGGCUAGAAGUGUAUACUUGAGAGCUUGACAAUGUGUCGAGUUCGUUUCGCGGCGUUAAUGAGGUACCGGAGUCCGGG
........(((((((.((((.((((((.((((....))-))......................(((((((((.....))))))))))))))).)).)).)))))))..((((...)))). ( -41.50)
>DroSec_CAF1 8124 119 + 1
AUCCACAUCCUCAUUUACCCACGGAACUGUUCCGAUGA-GCUGGGCUAGAAGUAUAUACUUGAGAGCUUGACAAUGUGUCGAGUUCGUUUCGCGGCGUUAAUGAGGUACCGGUGUCCGGG
........(((((((.((((.((((((.((((....))-))........((((....))))..(((((((((.....))))))))))))))).)).)).)))))))..((((...)))). ( -41.70)
>DroSim_CAF1 7640 119 + 1
AUCCACUUCCUCAUUUACCCACGGAACUGUUCCGAUGA-GCUGGGCUAGAAGUAUAUACUUGAGAGCUUGACAAUGUGUCGAGUUCGUUUCGCGGCGUUAAUGAGGUACCGGUGUCCGGG
........(((((((.((((.((((((.((((....))-))........((((....))))..(((((((((.....))))))))))))))).)).)).)))))))..((((...)))). ( -41.70)
>DroEre_CAF1 7482 118 + 1
GUCCACU-CCUCAUUCACCCACGGAGCUCUUCCGAUGA-GCUGCGCUGGAAGAGUAUACUUGAAGGUUUGACAUUGUGUCGAGUUCGUUUCGCGGCGUUAAUGAGGUGCCGGGGUACGGG
.....(.-(((((((.((((.(((((((((((((.((.-....)).)))))))))......(((..((((((.....)))))))))..)))).)).)).))))))).)(((.....))). ( -40.20)
>DroYak_CAF1 7482 119 + 1
AUCCACU-UCUCAUUUACCCACGGAGCUCUUCCGAUGAUGCUGAGCUAGAAGAGUAUACUUAAGGGCUUGACAUUGUGUCGAGUUCGUUUCGCGGCGUUAAUGAGGUGCCGGAGUCCGGG
...(((.-.((((((.((((.(((((((((((................)))))))........(((((((((.....)))))))))..)))).)).)).)))))))))((((...)))). ( -39.19)
>consensus
AUCCACUUCCUCAUUUACCCACGGAACUGUUCCGAUGA_GCUGGGCUAGAAGUGUAUACUUGAGAGCUUGACAAUGUGUCGAGUUCGUUUCGCGGCGUUAAUGAGGUACCGGAGUCCGGG
........(((((((.((((.(((((...))))).....((.((((...(((......)))..(((((((((.....))))))))))))).)))).)).)))))))..(((.....))). (-37.04 = -36.52 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:04 2006