Locus 118

Sequence ID 4_DroMel_CAF1
Location 827,612 – 827,725
Length 113
Max. P 0.520045
window182

overview

Window 2

Location 827,612 – 827,725
Length 113
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 78.14
Mean single sequence MFE -27.27
Consensus MFE -23.51
Energy contribution -23.07
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -0.69
Structure conservation index 0.86
SVM decision value -0.03
SVM RNA-class probability 0.520045
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 827612 113 + 1281640
CUACUACAGCUGAGGGUGCUGAUGUGAUGUCAGAGUUUUACAAUGGACUCUUCGAGACGCUUAGAAAUCAGCAGCUGCGCAUAGUGGGUGCACACAUUUUGUAGCGACUGGGA
........((...((.(((((((.((((((((((((((......)))))))....)))).)))...))))))).))..)).((((.(.((((.......)))).).))))... ( -32.30)
>DroSec_CAF1 5229 85 + 1
CGACUACAGCUGAGGAUGCUGAAGUGAUGUCAGAGCAUUA-------CUCUUCGAGACGCUUAGAAAUCAGUAGCUGCGCAUAGUGGGUGCA---------------------
......((((((..(((....(((((.(.((((((.....-------))))..)).))))))....)))..)))))).((((.....)))).--------------------- ( -24.60)
>DroSim_CAF1 4805 85 + 1
CGACUACAGCUGAGGAUGCUGAUGUGAUGUCAGAGCAUUA-------CUCUUCGAGACGCUUAGAAAUCAGCAGCUGCGCAUAGUGGGUGCA---------------------
......((((((..(((.((((.(((.(.((((((.....-------))))..)).))))))))..)))..)))))).((((.....)))).--------------------- ( -24.90)
>consensus
CGACUACAGCUGAGGAUGCUGAUGUGAUGUCAGAGCAUUA_______CUCUUCGAGACGCUUAGAAAUCAGCAGCUGCGCAUAGUGGGUGCA_____________________
......((((((..(((.((((.(((.(.((((((............))))..)).))))))))..)))..)))))).((((.....))))...................... (-23.51 = -23.07 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:02 2006