Locus 117

Sequence ID 4_DroMel_CAF1
Location 827,361 – 827,470
Length 109
Max. P 0.600174
window181

overview

Window 1

Location 827,361 – 827,470
Length 109
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 80.80
Mean single sequence MFE -34.05
Consensus MFE -20.31
Energy contribution -23.12
Covariance contribution 2.81
Combinations/Pair 1.14
Mean z-score -1.89
Structure conservation index 0.60
SVM decision value 0.13
SVM RNA-class probability 0.600174
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 827361 109 + 1281640
ACCGACCAAAUAUUUUUUUGUUCGGUGUUCGUUGCUUAGUGCUCAGUUCUGCGGGCAGCGUUUUGUAUACAUACGCUGUGAAAUCAGGCAGAGGGUGUCCAAACAACUG
(((((.((((......)))).)))))....((((.((.(..(((...(((((..(((((((..((....)).)))))))(....)..))))))))..)..)).)))).. ( -32.00)
>DroSec_CAF1 4979 108 + 1
ACCGACCACAUAUUU-UUUGUUCGGUGUUCGUUGCUUAGUGCUCAGCUCUGCGGGCAGCGUUUGGUAUACAUACGCUGUUAAAUCAGGCAGAGGGUAUCCGAGCAACUG
(((((..(((.....-..))))))))....(((((((.(((((...((((((.((((((((.((.....)).)))))))).......)))))))))))..))))))).. ( -39.60)
>DroSim_CAF1 4555 108 + 1
ACCGACCACAUAUUU-UUUGUUCGGUGUUCGUUGCUUAGUGCUCAGCUCUGCGGGCAGCGUUUGGUAUACAUACGCUGUUAAAUCAGGCAGAGGGUAUCCGAGCAACUG
(((((..(((.....-..))))))))....(((((((.(((((...((((((.((((((((.((.....)).)))))))).......)))))))))))..))))))).. ( -39.60)
>DroEre_CAF1 5375 83 + 1
ACCGACCA-----------GUUU---GUC----------UGUUUUGUUCUGCGGGCAGCGUUCGGUAUACAUACGCUGUGAAAUCGGGCAG--UGUAUCCAAGCAACUG
(((((...-----------(((.---(((----------(((........)))))))))..)))))....(((((((((........))))--)))))........... ( -25.00)
>consensus
ACCGACCACAUAUUU_UUUGUUCGGUGUUCGUUGCUUAGUGCUCAGCUCUGCGGGCAGCGUUUGGUAUACAUACGCUGUGAAAUCAGGCAGAGGGUAUCCAAGCAACUG
.................((((((((((..(.((((((..(((........))).(((((((.((.....)).)))))))......)))))).)..)).))))))))... (-20.31 = -23.12 +   2.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:01 2006